BAC Information

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BAC

Clone NameMSMg01-151G01
Chromosome3 (Build37)
Map Location 58,781,167 - 58,781,484
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1
Downstream geneLOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151G01.T7 (MSMg01no151_g01.b1)MSMg01-151G01.TJ (MSMg01no151_g01.g1)
ACCAG353559AG353560
length734730
length of high quality
(start - end)
323 (44 - 366)335 (75 - 409)
definitionCHROMAT_FILE: MSMg01no151_g01.b1 PHD_FILE: MSMg01no151_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:10 2005CHROMAT_FILE: MSMg01no151_g01.g1 PHD_FILE: MSMg01no151_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTACCATGTAACATACTACCCAGTACCACAACCAGATGGTAGCAGAA
ATGGAATTCAAGTGCAGACAGTCTGCTCTCTAGCTTGTTCATCCTGTTCA
ACCACCATGTAGAATTGGCATTACTGTTATTATTTCTTCACTTGGTCTTC
TCTTTAAGCTTTCTTTGATGCGTACACAGTACTTAAAATCAAAGAGAGCG
AAAGCTGGGAAACACCCATGCTTGAGAGATAGGAAGAATCAGAGAAAGGA
CACAGACTGTAGAAAGATACATTAAAGCAGTGATATATGAAGGAGGACCA
TGCTAAGTAAAAGATAATATCCTGGGGGAAATGCTCCCATTCTGGAGATA
GGCAAGAATTTAACACACACACAAAACACAGATCACAAAGCAAAACACAC
TGCATTGGACCTCATTAGCACTGAGATTTTATGCTTTGTTAATAAAGCGC
TAACTAAGTAACTGAACAAAGTAACTCACACATTGACAAAATGTTTATAC
TAACTATGTCTGACGAAGGACTGACGTCCAATGTACGTACAGAACTTGTA
CCACTCTATACTAAGGGAATATTAGAAATTACCAAAGCACACATGCTCAC
CTGGCCGCATACATTCACGTGCCCAACTTTTTCACGCATTGCTCCCATAT
GACCCCTCATTACCCCCTCCAAACTCCCCGCATA
ATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTGACCTATGGAATAAGGGCTATTT
TGGTTGAAAGGGCTAAATGGAAGCCTTTAGAGTTGCTTCTGCCAGGGAAA
ATAGTGAATCAAAACCAGTATCATTTCTCTGGAGAAGGAACTGTAGAAAT
TAGTGCCACCCTCAAGGAGTTGAAAAATGCAGGGGTGGTGGCTCCCACTA
CATCTCCCTTTAATTCTCCTATCATGTCAGTAGAGAAGACAGATGGATCA
TGGAGAATGTCAGATGACTATTGAAACTCAATCAGGGAGTGACTGTGATC
ACAGCTACTGTACTAGACGTGGTGCCCTTACTGGAGCAGATTACACATCT
TCTGATACATGCCCCGCACCTATTGATCTAGTAAATGCCTTTTACTTAGT
ATCTGTTCATAAAGATTGCCAGAAGTAATTTGCTTCCAGTTTCCAAGGCC
ATCAATCCCTTTAAAGTGTTACCTCAACTATAGATTAACTCTCCGGCCAT
GTGTCATAACTTAGAGGAATCTTGATTATTTTTCCCCCAGAATATCTCAT
TGTTTTACTATATGGATGACCTTATGCTGATTGAACCAAGTGAGCGCCAC
GCATCACCTCCTTTGCATTCCTTGCCAACACCTATGCGCCCTCCCACAAC
GCAAAATACCCCCTCCCAAAATCTCGATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_g01.b1 MSMg01no151_g01.b1 CHROMAT_FILE:
MSMg01no151_g01.b1 PHD_FILE: MSMg01no151_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:10 2005
         (323 letters)



>mm_chr3_58780851_58781573
          Length = 723

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctttaccatgtaacatactacccagtaccacaaccagatggtagcagaaatggaa 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaattctttaccatgtaaaatactacccagtaccacaaccagatggtagcagaaatggaa 575

                                                                       
Query: 64  ttcaagtgcagacagtctgctctctagcttgttcatcctgttcaaccaccatgtagaatt 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 574 ttcaagtgcagacagtctgctctctagcttgttcatcctgctcaaccaccatgtagaatt 515

                                                                       
Query: 124 ggcattactgttattatttcttcacttggtcttctctttaagctttctttgatgcgtaca 183
           |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 514 ggcattactgttattatttcttcactaggtcttctctctaagctttctttgatgcgtaca 455

                                                                       
Query: 184 cagtacttaaaatcaaagagagcgaaagctgggaaacacccatgcttgagagataggaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cagtacttaaaatcaaagagagcgaaagctgggaaacacccatgcttgagagataggaag 395

                                                                       
Query: 244 aatcagagaaaggacacagactgtagaaagatacattaaagcagtgatatatgaaggagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aatcagagaaaggacacagactgtagaaagatacattaaagcagtgatatatgaaggagg 335

                             
Query: 304 accatgctaagtaaaaga 321
           ||||||||||||||||||
Sbjct: 334 accatgctaagtaaaaga 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)