BAC Information

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BAC

Clone NameMSMg01-151H06
Chromosome3 (Build37)
Map Location 23,487,300 - 23,487,664
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040378, LOC623751, LOC100039548
Downstream geneEG635702, EG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151H06.T7 (MSMg01no151_h06.b1)MSMg01-151H06.TJ (MSMg01no151_h06.g1)
ACCAG353613AG353614
length734724
length of high quality
(start - end)
373 (48 - 420)504 (78 - 581)
definitionCHROMAT_FILE: MSMg01no151_h06.b1 PHD_FILE: MSMg01no151_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:15 2005CHROMAT_FILE: MSMg01no151_h06.g1 PHD_FILE: MSMg01no151_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCCCCTGACCTCTCTCATTTATAGGTTGTAACTTAGAGGTGT
GAGAAGAAATGAATCTGTTTCTTAGGGCCATGGTGGTGTTTATTACAGTA
AAAGAAAAGCAAATTAGAATAGAAATATCCCTTAATTAATAACAAGTATG
TTTTGAGCATTATTAGAGAGATAAATATTACTAAAGGATTTGTGATTTTG
TCTTTCTAACAGTGAACTTTTGTTGTGAGATTAGTTCTCAGTGTAAGACC
CATAAGAATGTCTGTATTATTAAATATGAAGACCATTTTTGAATATTAGT
ATTTGTCTTCCAATTATAGCAATGTTATCCTGACAACAAAGCTAAGAGAA
AAAATTAATTATTTTCGTGCCCCCCACAANAAACTGAGCTTAAGCAAGGT
TTAGTCAGTAGAGAAATACTGGACCTAGGATTTCTCCCCATTGCTCTACT
CTGAGTGCACATAAGTGACCAATACCAAAACAAACAAAGCACTGGTCTTG
ATTACTGGCTATAAAACTGCTTACTCAACTTACTACCCACACTTTTAATA
TATTTATAGAACACTTAAAAGTTTGAGTTTTCTATAACAACTCTCTAGCC
CTAGCCCCATAGTTACGGCTTGATTGAACACTTTTATCCTTGTTACATGG
AGGCCCATACCTGCCCTTGCCCCTCTTTTTTTGT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTATACTGGGGCATAGAATCT
TCACAGGACCAAGGGCCTCACCTCCCAATGATGACCAATAGGCCATCCTC
TGCTACATATGCAGCTAGAGCTATGAGTCTCACCATGTGTTTTCTTTGAT
TGGTGGTTTAGTCCCAGGGAGCTCAGGGGATACTGGTTAGTTCATATTGT
TGTTCCTCCTATGAGGCTGCAAACCCCTTCAGCTCCTTGAGTACTTTCTC
TAGCTCCTTCACTGAGGACCCTGTGCTCCATCCAATGAATGACTGTGAGC
ATCCACTTCTGTATTTGCCAGGCACTGGCAGAGCCTCTCAGGAGACAGCT
ATATCAGGCTCCTATCACAAAAATCTTGTTGGCATCTGCAATAGTTTCTG
GGTTTGCTGGTTGTTTATGGGATGGATCCCCAGGTGGGGCAATTTCTGGA
TGGTCATTCCTTCAGTCTCTGATCTGAACTTAGTCTCTGTAACTCCTTCC
ATGGGCATTTTGTTTCCCATTCTAAGAAGGAATGAAGTATCCACACTTTG
TTCTTCCTTCTTCTTGAGTTTTATGTGTTTTTCAAGTCGTATCTTGTGCA
TTCTATATTTCCGAGCCAACATTCACTTATCATTGAGCGCCTATCATGGG
CCGTTCTTTTGCCAATGTCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_h06.b1 MSMg01no151_h06.b1 CHROMAT_FILE:
MSMg01no151_h06.b1 PHD_FILE: MSMg01no151_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:15 2005
         (373 letters)



>mm_chr3_23487096_23487868
          Length = 773

 Score =  659 bits (341), Expect = 0.0
 Identities = 359/365 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcccctgacctctctcatttataggttgtaacttagaggtgtgagaagaaatg 64
           ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattattcccctgacttctctcatttataggttgtaacttagaggtgtgagaagaaatg 510

                                                                       
Query: 65  aatctgtttcttagggccatggtggtgtttattacagtaaaagaaaagcaaattagaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aatctgtttcttagggccatggtggtgtttattacagtaaaagaaaagcaaattagaata 450

                                                                       
Query: 125 gaaatatcccttaattaataacaagtatgttttgagcattattagagagataaatattac 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 449 gaaatatcccttaattaataacaagtattttttgagcattattagagagataaatattac 390

                                                                       
Query: 185 taaaggatttgtgattttgtctttctaacagtgaacttttgttgtgagattagttctcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 taaaggatttgtgattttgtctttctaacagtgaacttttgttgtgagattagttctcag 330

                                                                       
Query: 245 tgtaagacccataagaatgtctgtattattaaatatgaagaccatttttgaatattagta 304
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 329 tgtaagacacataagaatgtctgtattattaagtatgaagaccatttttgaatattagta 270

                                                                       
Query: 305 tttgtcttccaattatagcaatgttatcctgacaacaaagctaagagaaaaaattaatta 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 269 tttgtcttccaattatagcaatgttatcctgacaacaaagctaagaaaaaaaattaatta 210

                
Query: 365 ttttc 369
           |||||
Sbjct: 209 ttttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)