BAC Information

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BAC

Clone NameMSMg01-151I08
Chromosome3 (Build37)
Map Location 140,593,735 - 140,594,162
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC229883, LOC621343
Downstream gene4930590L14Rik, Pdha2, Unc5c, LOC100039923, Bmpr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151I08.T7 (MSMg01no151_i08.b1)MSMg01-151I08.TJ (MSMg01no151_i08.g1)
ACCAG353662AG353663
length727754
length of high quality
(start - end)
234 (75 - 308)431 (78 - 508)
definitionCHROMAT_FILE: MSMg01no151_i08.b1 PHD_FILE: MSMg01no151_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:21 2005CHROMAT_FILE: MSMg01no151_i08.g1 PHD_FILE: MSMg01no151_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAACAGGATCCGC
GGAATTCTTTTGCTTTGTTAACAAAAAATGTTTGCTTGCTATCTCTTAGT
AATCAAAGGGCTGGGGTCATGGGATGCTGACTCATAAGATGATCAAAAGG
GAAACCTAGAGTAAATGACTGGACTTGACTGATATGTAAAAGACTGGACC
TGTGTTCTTCAGGAGATGAGCTATCCAGAGAATTTTTAGGATTAAAAGAG
AACTGCTTGGAGAACACACACACACACACACACACACACACACACACACA
CACACACACACATACACCCAAAATACAGACATAGAGATCTCTTACAATAG
CATGCAAGCAAAATATAGATAGACAAATCTGCAGAGAGAAAGCAAAACAG
AGAGAAGCAGCCTTGCCACCCCCCCCAAGCAGAACACCGGTCATCATCAG
CTTGGATCCAAGATTTGATTTTTGAGCCATTCTTTTTGCAGCTCCCAGAC
ACCCCTTCTCTCAGAACTCCTCTCCATGCCCAGGATGCTTCTGCCAAACT
GATTGGTTGCCTATGCAAGTGGAAGCAATACTGGCGCACCAGTAGTTTGC
TGGCACCCAGCTCTGATCACGTTCTTATTACCAACACCCGCTATTACCAT
GCCCCATGTCCTCCCCCCCCATCGCATTTCCCGTCGCCTATACTACCCCC
CCTTCATCATATCTGCCACCCCCCGCC
CCACTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGTCTAAAACATAACCCTATA
GAGACACAGAAATCATGCTTGAGATGATGAAGTACTAGAATCACATTATG
GAGATGATGGCACAGTGTTGTAGGTGGTTAGTAACACTGAATTATATATT
TTAACTGATTGACATCCTACCGAGAAGAATCTTGGAAAGAAAAGAGAGAA
ATATTCTATTAAAAGAAATAAAATTGGAAAACATTAATTTTCCAATGATT
ATTGACTTCTACTAGTAGTTCTTATTTATAATAACCAAAGCTGTAATGTA
GATAAGGAAGCCTTTTCACTCTATGCTTTTGCTCTTTGGATAAGTACATA
ATGGCATTTGTTTCTAGTGTATACCCCCGCTCCCGACAGGTGGTTAAAAG
TACTATGTATGTATATGTGTAGCAATCCCCCAAAGTATGACTATACAAGG
AAGTACAACGTGGAAATGAAGGGTGCGATAGAAAGTCATACCCCCCCTTT
CTAGCCCTGTTCCCCACCTCTTCTGCCCCTCGCATCCCCCCTTTTTTCCC
CCCCTTTCCTCCGCCCCCCGACTCCGCTCTTCCCCCCCCTTCCTTCGCCC
ATTTCCCCTTCACCCCCCCTCCCCGCCTTCTCCCCCACCCTCATTCCATC
ACCTCTCTCCCCCCCTCCTTCTTCTTCCCCCCGTACCGCCCCCTTCACCT
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_i08.g1 MSMg01no151_i08.g1 CHROMAT_FILE:
MSMg01no151_i08.g1 PHD_FILE: MSMg01no151_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:21 2005
         (431 letters)



>mm_chr3_140593535_140594365
          Length = 831

 Score =  781 bits (404), Expect = 0.0
 Identities = 422/428 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagtctaaaacataaccctatagagacacagaaatcatgcttgagatgatgaagtacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagtctaaaacataaccctatagagacacagaaatcatgcttgagatgatgaagtacta 260

                                                                       
Query: 61  gaatcacattatggagatgatggcacagtgttgtaggtggttagtaacactgaattatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatcacattatggagatgatggcacagtgttgtaggtggttagtaacactgaattatat 320

                                                                       
Query: 121 attttaactgattgacatcctaccgagaagaatcttggaaagaaaagagagaaatattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttaactgattgacatcctaccgagaagaatcttggaaagaaaagagagaaatattct 380

                                                                       
Query: 181 attaaaagaaataaaattggaaaacattaattttccaatgattattgacttctactagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaaaagaaataaaattggaaaacattaattttccaatgattattgacttctactagta 440

                                                                       
Query: 241 gttcttatttataataaccaaagctgtaatgtagataaggaagccttttcactctatgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcttatttataataaccaaagctgtaatgtagataaggaagccttttcactctatgct 500

                                                                       
Query: 301 tttgctctttggataagtacataatggcatttgtttctagtgtatacccccgctcccgac 360
           |||||||||||||||||||||| |||||||||||||||||||||||||   | |||||||
Sbjct: 501 tttgctctttggataagtacatcatggcatttgtttctagtgtataccaatgttcccgac 560

                                                                       
Query: 361 aggtggttaaaagtactatgtatgtatatgtgtagcaatcccccaaagtatgactataca 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 aggtggttaaaagtactatgtatgtatatgtgtagtaatcccccaaagtatgactataca 620

                   
Query: 421 aggaagta 428
           ||||||||
Sbjct: 621 aggaagta 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)