BAC Information

Click to search

BAC

Clone NameMSMg01-151O23
Chromosome3 (Build37)
Map Location 118,543,966 - 118,544,083
singlet/doubletsinglet
Overlap geneDpyd
Upstream geneSnx7, LOC100043260
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151O23.T7 (MSMg01no151_o23.b1)MSMg01-151O23.TJ (MSMg01no151_o23.g1)
ACCAG353962AG353963
length752830
length of high quality
(start - end)
112 (72 - 183)118 (77 - 194)
definitionCHROMAT_FILE: MSMg01no151_o23.b1 PHD_FILE: MSMg01no151_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:53 2005CHROMAT_FILE: MSMg01no151_o23.g1 PHD_FILE: MSMg01no151_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTC
ACTTTGTAGATCCCCCTGGCCTCGAAACTCAGAAATCTCCCTGCCTCTGC
CTCCCAAGTGCTGGGATTAAAGGAGAGCACCAACACGCCAGGCTCCGACT
TTGTTATCTTAATAGCAAGTTTTATATTTTAGTTTAGATGCATGAACCTA
CTGATTAGGATTATCTGTAAGTGATAACACTTTAGGATACATGATTTATG
GAATTACTGAATGAATAGCATATAAACAAATGATGCTCATGGTCAAAGAA
ATAACTGGCTAACTACAATGTTTGTATAATTATTTTTAATAGCCTATTTC
AATCTTCAGATACTAATATCTTACACCCTTTTAGGTGCGTATTTTACAAT
TTTAAGAACATATCTCCCACTGTATCTTTTTACCACATTGTTTTACACAA
GCACATCCCATTTTATCTAATAACCTCCAACCCCACTACGAACCACCCAG
ATGCCGAGCATCCTCACCAGTACCACGCTCTCACAAGTTCTTTCAGCCTA
GTCCAGTCTCTCGAATACTCCTATCATAGCCCGAAAGCTAAATCTATCTA
CCCATGTACCCCCCCTATCTATGTATCCATCCATGTCTCTACCTATCTAT
CCACCTCTCCATTACCCCCTCCATCCACTTATACCCCGTTTCATCCCCCG
ATACCCCCCTGTCCTCCCGCTCGATCCGCCCCCCCCTGCCCCATGCCCCG
AT
CATGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCGCCACCTCCCAGGAAGTTGAGGAGTTCCTTAGGT
AGGTAACTCCTGGATGTTTTGATAAAGAAGTGTAGAAGCAAAATGAGCCC
GGCAGATGGTGTCATGGTGGTGATTGGTAATGGTAGTGGTGGTGGTACTC
CCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCTCACTCCCCCCTCCTCCTCCCCCCCCCCCCCCCCTCCCCCCTTCCTC
CCCCCCCCTCTCCCCCCCCCCCTTTTCCCCCCCCCCCCCCCCCCCCCCTC
CCCTCCCCCCCCCCCCTCCTCCCCCCCCCCCCCCCCCCCCCCTACCCCCC
CCCTTCCCTTCCCCCCCTCTCCCCCCCCCCCTTCCTTCCCCCTCTTCCCC
CTCCCCCCCTCCCCCCTCCCCCCCCCTCCCCCCCTTCCCCTCCCCTCCCC
CATCCCCCCCTTTCCCCCCCCCCCCCCCCCCCTCCCCCCCCCTTCCTCTC
CCCCCCCCCCCCCCTCTTCCCCCCCCCCCCCTCCCCCTCCCCCCCCCTCC
CCCCCCACCCCCCTCCCCCGCCCCCCTTTCCCCCCCCCCCTCCCCCCCCC
GCCCCCCCTCCCCTCCCCCTTACCCCCCTCTCCCCCCCCCCTCCTCCCTC
CTTCTACCCCCTCCCCCTCTTACCCCCCCCCCCCTTACCCCCTCTCCCTC
TCTCCCCCCCCCTCCTCCCCCCCCTCCCCCCCCCCTCCCCCCCCCCCCCC
TCCCCCCCCTCCCCTCCCTCCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_o23.g1 MSMg01no151_o23.g1 CHROMAT_FILE:
MSMg01no151_o23.g1 PHD_FILE: MSMg01no151_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:53 2005
         (118 letters)



>mm_chr3_118543766_118544283
          Length = 518

 Score =  197 bits (102), Expect = 1e-55
 Identities = 114/118 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaagttgaggagttccttaggtaggtaactcctggatgttttgataaagaagtgtaga 60
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aggaagttgaggagttcattaggtaggtaactcatggatgttttgataaagaagtgtaga 260

                                                                     
Query: 61  agcaaaatgagcccggcagatggtgtcatggtggtgattggtaatggtagtggtggtg 118
           ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaagatgagccaggcagatggtgtcatggtggtgattggtaatggtagtggtggtg 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)