TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCCAAACCCTGACATTTCTGATTTCTGGGCTCTGACACGCACCCC
TGCCACACACTCCTGCCACAATTGCCACACACTCCTGCCACACACTCCTG
CCACACACCCCTGCCACACACTCCTGCCACAATTGCCACACTCCTGCTAC
ACACTCCTGCCACACACTCCTGCCACACACCCCTGCCACACACTCCTGCC
ACAATTGCCACACACTCCTGCCACACACTCCTGTCATACACTCCTGCCAC
AATTGACACACACTCCTGCCACAATTGCCACACATTCCTGCCACATGAAC
CCGTTTGCTCCATGCGTTTCCTCTTGGTGAACTGTATTCCCTCAGATTGT
GAGTCAACATAACCCCCCCCCTATATTAGCTTGCTTTCTCCTGCTGTGTT
AAAGCACCATGACCACAAGAAAGTTGAGGAGGAAAGGGTTTCTTTGACTT
GTAGATTAGAGCCCCTGGCCAGAGGAAATCAAGGCAGAAGCTCAAGGCAA
GAACTGAAACAGAGACCATGAAGGGACTTAGCTTACTGGCTTGCTCAGCC
TGCTTTGTTATACCACCTGCCTAGGGGCAGCAGCACCCTCCACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACGGT
GGGCTGGGTGCTCCTACATCCGTCGTT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTACCATGAACACAGAGACCACACCCT
CCTAAAGACCAGAGAGGGCAAGAGAAACCAAGGAACAAAGCACACAAACA
ACAGAGACAAGAGCAGGTAGCAGCAGCTAGAATTACAACCATCTCAAACT
TAGACGCCAGCATAAAAACTCAGTCAACAACAGCAGGGCAATATATGTTC
AGCAGCACCCAGCAACCCTACTGCTGCAGGCCCTGAGAATTGCAACATCA
CTGAAACACAAGAAGCACAAGAAAAAAAACTTAAGGTAGCTTTTAATAAT
ATGACAGAGGTCCTTAAAGAGGAAATGGATGAATCCCTTAAATCTATAAA
AACACAGTGGACAGAAATGAATAAGACGTGAAAATAGAAATGGAACCACA
CACACACACACACACACACACACACACACACACTGAGAGAATCTGTGTAG
GGGGGTGGGTCTGATGCTAAAGTACTGTTCCCCAATTGGTTTTTGATCTA
TCAGTAAAGATGCCAGGGGCCAATTGCTGGGCAGAAGGAAAGAGGCAGAA
CGTCCAGGTAACTGCAGGGGAGGCAAGGAGATGACAAAGAAGAAGGACTT
TTTGCCATGCTTCAGAGGGACAAAAGGTGACCAGTCATGTGAATCTCCGG
TAGAGTGACCGTAGGCTGCTTCTCCAAGTGGGAG

Query= MSMg01no151_p11.b1 MSMg01no151_p11.b1 CHROMAT_FILE:
MSMg01no151_p11.b1 PHD_FILE: MSMg01no151_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:55 2005
         (660 letters)



>mm_chr3_9957757_9958812
          Length = 1056

 Score = 1120 bits (579), Expect = 0.0
 Identities = 632/665 (95%), Gaps = 27/665 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagccaaaccctgacatttctgatttctgggctctgacacgcacccctgccacac 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gaattcagccaaacattgacatttctgatttctgggctctgacacgcacccctgccacac 203

                                                                       
Query: 65  actcctgccacaattgccacacactcctgccacacactcctgccacacacccctgccaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 actcctgccacaattgccacacactcctgccacacactcctgccacacacccctgccaca 263

                                                                       
Query: 125 cactcctgccacaattgccacactcctgctacacactcctgccacacactcctgccacac 184
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 264 cactcctgccacaattgccacactcctgctacacactcctgccacacac----------- 312

                                                                       
Query: 185 acccctgccacacactcctgccacaattgccacacactcctgccacacactcctgtcata 244
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 --ccctgccatacactcctgccacaattgccacacactcctgccacacactcctgtcata 370

                                                                       
Query: 245 cactcctgccacaattgacacacactcctgccacaattgccacacattcctgccacatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cactcctgccacaattgacacacactcctgccacaattgccacacattcctgccacatga 430

                                                                       
Query: 305 acccgtttgctccatgcgtttcctcttggtgaactgtattccctcagattgtgagtcaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acccgtttgctccatgcgtttcctcttggtgaactgtattccctcagattgtgagtcaac 490

                                                                       
Query: 365 ataacc-----ccccccctatattagcttgctttctcctgctgtgttaaagcaccatgac 419
           |||| |     ||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ataagctttggcc-----tatattagcttgctttctcctgctgtgttaaagcaccatgac 545

                                                                       
Query: 420 cacaagaaagttgaggaggaaagggtttctttgacttgtagattagagcccctggccaga 479
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cagaagaaagttgaggaggaaagggtttctttgacttgtagattagagcccctggccaga 605

                                                                       
Query: 480 ggaaatcaaggcagaagctcaaggcaagaactgaaacagagaccatgaagggacttagct 539
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 606 ggaaatcaaggcagaagctcaaggcaagaactgaagcagagaccatgaagggacttagct 665

                                                                       
Query: 540 tactggcttgctcagcctgctttgttataccacctgcctaggggcagcagcaccctccac 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tactggcttgctcagcctgctttgttataccacctgcctaggggcagcagcaccctccac 725

                                                                       
Query: 600 acacacacacacacacacacacacacacacacacacacacacacacacacacac----gg 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 726 acacacacacacacacacacacacacacacacacacacacacacacacacacacacacgg 785

                
Query: 656 tgggc 660
           |||||
Sbjct: 786 tgggc 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 133
Number of extensions: 41
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1056
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1046
Effective search space:   679900
Effective search space used:   679900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)