BAC Information

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BAC

Clone NameMSMg01-152H02
Chromosome3 (Build37)
Map Location 54,603,002 - 54,603,446
singlet/doubletsinglet
Overlap geneSmad9
Upstream geneUfm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5
Downstream geneRfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152H02.T7 (MSMg01no152_h02.b1)MSMg01-152H02.TJ (MSMg01no152_h02.g1)
ACCAG354314AG354315
length722730
length of high quality
(start - end)
456 (78 - 533)445 (81 - 525)
definitionCHROMAT_FILE: MSMg01no152_h02.b1 PHD_FILE: MSMg01no152_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:32 2005CHROMAT_FILE: MSMg01no152_h02.g1 PHD_FILE: MSMg01no152_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGC
GCGGAATTCATTGTGGTGCCCTTAAATCTGCAGTCCAACTAACCCAACAA
AGGTCAGCTGTGGATGGGAAGTGCAAGAATCCAGGAGTTGCTCAGTACCA
TGACTCTAGTTGTTTCAGCTGGTCTTCTATAGAAGTAGATTCCAACAGAT
GTGCTGGCTAGAGAGTGTAAGCAGGCGAAGAAGAGTGAATCTTCCTTCTT
CCAATGTTCTTATGAAGGTCTCTAGCAGAAAGTATATCCCAGATCAAAGT
TGTGTACCACCACTCCTGGATCTGGTATTTGCTTCGTCTCAGGCCAGCCT
TGAATTTAGAAATCTCCTTGCCTTAGTCTCCTGGGATTAAAGGCATGTAC
TCCCTTGCCTGGGCCTAAGCTTTTCATCGCCACTATGCCTCAAGATCTCC
ATGACCATATCCAGATCAGAAACTTATGTCTCCCAGCCTCATGATCTGGA
TCACAGGCGAGCCCTCCAACTCTGGATTGTAGTTCATTCCAGACATAGTT
AAGTTGACAACCATGAATAGCCATTACACCATCCATCCATCCATAACTAT
ATATTCTATTTTCCTGTCCTACAGAGATCTATGTGTTCCCCCTAGTCCCT
TACTCTGTACATAACCTCATAGGCTTGAATTGTAGCTGTACGGCTTGTAT
GGCTATGGAATATAGCTTGCGT
TTTCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGATCCACCTGCCTCT
GTCTCCCTGCTGCTGAGATCAAAGGCAGGTACCACGGTACCACTACACCC
TGAAGCTTCTACTCCTGAATAGTTTCTTACAACTACAGATTGCCAGGGAT
ATTTGGCCACTTGTGAGGCGATCAAAGGGGCGGTGGGAAATCTGGGACAA
TGCTTTGTGTCCTTAGATGGGTACACATGGCTTTTCCAAGGAAGAAACCA
GGAGAAATATCAGAAAAAAATAGGGATTCCAGGAGGTGGGGTGGCTAGGA
ATGGAAGTAGTTATGTAAAGATAAATTACTCAAGTGTTCTGAGGAGACAT
AAAATCCCAATATAGTTATTACAATAGAGTTCTTAACTATTGTTCAGAAC
TCGATTATGTTATTTTTCGAGCCCAAGAAGATTCACATGCGCGGCGTTTT
TAAAGTTCTGAGACCTGATGTCTGTGCAAATGGTTTACCATTAGATGTCT
GGCGTTATGTAGGTGGGGACTGCCTCTAATGTGCGTTTGAGTCCCTGGTA
CCTGACCCTGTACCCCAGTATACACTAATGCCCTAGACAGACTTAATGAA
TTGACCCGCTTGGGTTTTTTTTTTTTAAACACCTTCTACCTGATAGTTTT
GAGGGCGAATCGAGCTTCCCGATATTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_h02.g1 MSMg01no152_h02.g1 CHROMAT_FILE:
MSMg01no152_h02.g1 PHD_FILE: MSMg01no152_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:32 2005
         (445 letters)



>mm_chr3_54602747_54603591
          Length = 845

 Score =  814 bits (421), Expect = 0.0
 Identities = 439/445 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagggatccacctgcctctgtctccctgctgctgagatcaaaggcaggtaccacggtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 acagggatccacctgcctctgtctccctgctgctgagatcaaaggcaggtaccacggtac 641

                                                                       
Query: 61  cactacaccctgaagcttctactcctgaatagtttcttacaactacagattgccagggat 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cactacaccctgaagctcctactcctgaatagtttcttacaactacagattgccagggat 581

                                                                       
Query: 121 atttggccacttgtgaggcgatcaaaggggcggtgggaaatctgggacaatgctttgtgt 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atttggccacttgtgaggagatcaaaggggcggtgggaaatctgggacaatgctttgtgt 521

                                                                       
Query: 181 ccttagatgggtacacatggcttttccaaggaagaaaccaggagaaatatcagaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccttagatgggtacacatggcttttccaaggaagaaaccaggagaaatatcagaaaaaaa 461

                                                                       
Query: 241 tagggattccaggaggtggggtggctaggaatggaagtagttatgtaaagataaattact 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 460 tagggattccaggaggtggggtggctaggaatggaagtagttatgaaaagataaattact 401

                                                                       
Query: 301 caagtgttctgaggagacataaaatcccaatatagttattacaatagagttcttaactat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 caagtgttctgaggagacataaaatcccaatatagttattacaatagagttcttaactat 341

                                                                       
Query: 361 tgttcagaactcgattatgttatttttcgagcccaagaagattcacatgcgcggcgtttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct: 340 tgttcagaactcgattatgttatttttcgagcccaagaagattcacatgtgtggggtttt 281

                                    
Query: 421 taaagttctgagacctgatgtctgt 445
           |||||||||||||||||||||||||
Sbjct: 280 taaagttctgagacctgatgtctgt 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)