BAC Information

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BAC

Clone NameMSMg01-152K14
Chromosome3 (Build37)
Map Location 3,831,396 - 3,831,616
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157
Downstream geneLOC100039167, LOC667709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152K14.T7 (MSMg01no152_k14.b1)MSMg01-152K14.TJ (MSMg01no152_k14.g1)
ACCAG354477AG354478
length705819
length of high quality
(start - end)
221 (262 - 482)129 (208 - 336)
definitionCHROMAT_FILE: MSMg01no152_k14.b1 PHD_FILE: MSMg01no152_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:49 2005CHROMAT_FILE: MSMg01no152_k14.g1 PHD_FILE: MSMg01no152_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
ATACTTTGGACGAGGGCCTTGAACTTGTGATCTCTCTACCTCCACTTCAC
AAGTACTGGAATGGCAGACATATATCACCATGTCTAGCCCAGAAGCAAGT
ACATTTTAGTCTTTATCTAAATACCTTAATGACAAATTACAACTGTGTGC
ATTTAAGGTAAAATATAATCAATATATCCATGCAAATGACTGAGACTAGT
TCAAGGTCACTAAAAAATAATACTCTATTGATTTAAAACATGCTATATCG
TTTGTCTTTCATAATATAGGAAACTAGCTTTAGCTTTAAGGAAGTTCATT
TCTTTTCTTAAAACCAACTACAATGTTTGAAATTTTCAGCTGTCTGTGAG
CCCACTCAACTTCCATCTTTACATGCAATATAAAGCATCTGCTCACTAAT
GCGAATCCAAGAGTCCCATGCTCTAGTGCACATGCCTATATCCCCACACA
TTGCAAATAGCTGCTATCACTTGTTAGGATAACTTAATTAACCTTGCTTA
TTAAAAATCTTACGTTCGTTAGTGACAACATCCTGATTAGTACCTTTTCC
CTGCTCGGCGACCTCCTAATTTAACACCAAATGAACTTTTACATGCGGAA
CAATGCCCCGCGNATACACTCCGTGCCACTGACTACAGTTAGCAATGCAC
ACGGG
TTTCTTTTCCTTCCCCTATTTAAACCAAACTCCCCTTTTTTTAACAACCT
ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCATAACCCCATGGGACAAGGAATA
GTTGAACGTGCTCATCACACTTTACAAAATTGGTTTTTAAAAATGAAACA
GGGGCAGTTATATCCCCCAAGGTCACCAAAGGCACATCTTTCTTTTGCTT
TATTTGTTCTCAACTTTTTGCAAACCGATGTTAAAGGTCTGCAGCAGATC
GCCATTGAAATCCAGTTACTTCTAGTTCTTATGCCATGGTAATGTGGCCG
GACTCATTAACTAACGAATGGAAGGCTGCAGACCCGGTCCTAATCTGGGG
AAGGGGCTCATAAAAAGAACACGTTACACGACGGCTACCTGAAAGATTAG
CCTCCCAACTAGACCCAGACCCTGAATCTTTTAGTAAGCACAATTCTGAC
CTCGATCATCAACGACCCTATTGTGGAAACCCTAACTCCATTTCCGCTTG
GCATGCCCCCCGATAATCACGAACCCCACAACACCTTGATGTACCACCAC
GCCGTAGTCTAATGCCCGCACCCTCCGGCCCGCACCCATATCTCTTGACG
GCCCACCAGTGGTGCCCCAACCCCCCGCCCCAAGTCCCCCATGCCCCTTC
CCTCTCCTTTTCGCCTTCTTTTCCCCCCCTCTTTTTCACCCCTCGTTTTT
CCTAATTCTCCACCGTTTTGCTACCCCCTCCGTGAACATCTTCATCTCCG
TTCCTGTTCCGCCTGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_k14.b1 MSMg01no152_k14.b1 CHROMAT_FILE:
MSMg01no152_k14.b1 PHD_FILE: MSMg01no152_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:49 2005
         (221 letters)



>mm_chr3_3831196_3831816
          Length = 621

 Score =  412 bits (213), Expect = e-120
 Identities = 219/221 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaataatactctattgatttaaaacatgctatatcgtttgtctttcataatatagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaataatactctattgatttaaaacatgctatatcgtttgtctttcataatatagga 260

                                                                       
Query: 61  aactagctttagctttaaggaagttcatttcttttcttaaaaccaactacaatgtttgaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 aactagctttagctttaaggaagttcatttcttttcttaaaaccaactgcaatgtttgaa 320

                                                                       
Query: 121 attttcagctgtctgtgagcccactcaacttccatctttacatgcaatataaagcatctg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 attttcagctgtctgtgagcccactcaacttccatctttacatggaatataaagcatctg 380

                                                    
Query: 181 ctcactaatgcgaatccaagagtcccatgctctagtgcaca 221
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcactaatgcgaatccaagagtcccatgctctagtgcaca 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)