BAC Information

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BAC

Clone NameMSMg01-152L05
Chromosome3 (Build37)
Map Location 46,768,828 - 46,769,322
singlet/doubletsinglet
Overlap genenone
Upstream geneEG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152L05.T7 (MSMg01no152_l05.b1)MSMg01-152L05.TJ (MSMg01no152_l05.g1)
ACCAG354505AG354506
length724738
length of high quality
(start - end)
499 (51 - 549)309 (76 - 384)
definitionCHROMAT_FILE: MSMg01no152_l05.b1 PHD_FILE: MSMg01no152_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:52 2005CHROMAT_FILE: MSMg01no152_l05.g1 PHD_FILE: MSMg01no152_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAT
CCGCGGAATTCCACAAATCTATCCAATACTCACAAAACTACATGTGCATG
TTGTTATTATCCACTGGACATGGATAATTTATGGATTATAAATGAATAAA
ATTATTTATGAATTGTGTAGTTTGGGGATTATTGTCCAAGCAATCAATAT
TTTATCATACTCTTATTAAGTATTACATGATATTAAATATAAATAAGTAA
ACATCATCTTGGAAAAATCTTGTTTTAATGTAGTTACATGTGTTTATAAA
TAATATATTAAATTTTCATCAGGAGAGAAATATACTCCAAGGTATATTTT
CATATTGGTACATTAAAATCAGAATAAGAATAGAGCTAACATGCTACCTT
ATTCTTCCCACCACTCCTTCACATCAAGCGTAAATCTACTAATCTGATGA
TTTATGACAATTTTCTCAAATCACATGTTAGAGGTCCTTGAATTGGGAAA
AATAACTGAACAACTCCATTATTTATCACTGTACAAAATTATTTGGAAAA
ATACCTGGCTCCTATACCTGCTTAAATTTTGATACAATGTCTTTTTCCAA
GAAACTGTTAGCGAACCATTATTTTACCCAACGAGAATTTGCGGTATTAT
AAGATTGTGTCAATGTGACCTATCCCCATATACATACACCTTACTATTTT
CTTTACACCGATTTCCCTTACATT
NTTCACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCCGAAATACTCTTTAGACTGTACCAAACTGGG
TTATTAGGTTTGTTGTTTTGTTTCTTGAATTCTTTATATACTATCAGCCC
TATGTCAGATAAAAGTTTGATGAAGTTCATTTCCTATTCCGTAGCCTGTC
ATTTTGTCTATTTGATGTTGCCCTCTTCTTTACAGAAGTTACTCATTTTC
ACGAGGCCCCATTTATCAATTATTGATCTTAGATATATTGATTAGAGATA
TTGTTCAGGTCATTGTTTCCTATGCCATTGCATACAAGGTTATTCCCCTG
TTTCTCTTCCACCAGGTTTAGTTCATCTGGTTTTATGTTGGTGCGCCTGA
TCCACTTATACTTGAGCTTCTTGTACAGATTGATACGAATGTTTTTACCT
TCTTACATTTGCCGACTTCTATCTTGTCCACCAACCTCCGGTTTCTTTGT
GAAAACTCATTTGTCCCCATTTTGCCGCATTTCCTTTTGTCTGTTCAATA
CGAAATGTGGCATATATACACTCCGTCCGATTCCCCGATTTTACCTTTCT
TTTCCGTCCTGTTTTTCCCCCTCCCCCCTTTTTTTTTTCTCCTTTCCCTC
CTCTTGCTTTTCCCTTTTCAATATCTTCCCCTCTTTTTTCTTCCTCTTCT
GCTATCCCCCCCGTTTATTCCTTCTTCTCTCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_l05.b1 MSMg01no152_l05.b1 CHROMAT_FILE:
MSMg01no152_l05.b1 PHD_FILE: MSMg01no152_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:52 2005
         (499 letters)



>mm_chr3_46768624_46769522
          Length = 899

 Score =  926 bits (479), Expect = 0.0
 Identities = 491/497 (98%), Gaps = 5/497 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccacaaatctatccaa---tactcacaaaactacatgtgcatgttgttattatcc 62
           ||||||||||||||||  |||   ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaaatcta--caaaaatactcacaaaactacatgtgcatgttgttattatcc 262

                                                                       
Query: 63  actggacatggataatttatggattataaatgaataaaattatttatgaattgtgtagtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actggacatggataatttatggattataaatgaataaaattatttatgaattgtgtagtt 322

                                                                       
Query: 123 tggggattattgtccaagcaatcaatattttatcatactcttattaagtattacatgata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggggattattgtccaagcaatcaatattttatcatactcttattaagtattacatgata 382

                                                                       
Query: 183 ttaaatataaataagtaaacatcatcttggaaaaatcttgttttaatgtagttacatgtg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttaaatataaataagtaaacatcatcttggaaaaatcttgttttaatgtagttacatgtg 442

                                                                       
Query: 243 tttataaataatatattaaattttcatcaggagagaaatatactccaaggtatattttca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttataaataatatattaaattttcatcaggagagaaatatactccaaggtatattttca 502

                                                                       
Query: 303 tattggtacattaaaatcagaataagaatagagctaacatgctaccttattcttcccacc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tattggtacattaaaatcagaataagaatagagctaacatgctaccttattcttcccacc 562

                                                                       
Query: 363 actccttcacatcaagcgtaaatctactaatctgatgatttatgacaattttctcaaatc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 actccttcacatcaagcgtaaatctactaatctgatgatttatgacaattttctcaaatc 622

                                                                       
Query: 423 acatgttagaggtccttgaattgggaaaaataactgaacaactccattatttatcactgt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acatgttagaggtccttgaattgggaaaaataactgaacaactccattatttatcactgt 682

                            
Query: 483 acaaaattatttggaaa 499
           ||||||||| |||||||
Sbjct: 683 acaaaattagttggaaa 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)