BAC Information

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BAC

Clone NameMSMg01-152L19
Chromosome3 (Build37)
Map Location 65,921,026 - 65,921,552
singlet/doubletsinglet
Overlap geneVeph1
Upstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048
Downstream geneTpi-rs2, Ptx3, LOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152L19.T7 (MSMg01no152_l19.b1)MSMg01-152L19.TJ (MSMg01no152_l19.g1)
ACCAG354533AG354534
length746742
length of high quality
(start - end)
490 (43 - 532)527 (71 - 597)
definitionCHROMAT_FILE: MSMg01no152_l19.b1 PHD_FILE: MSMg01no152_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:55 2005CHROMAT_FILE: MSMg01no152_l19.g1 PHD_FILE: MSMg01no152_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATCTCTGTTGTTCCGAAGTGATGCCTGACTGTTACTTGTGCGTATGAG
GTTCTTTCCAGAAAAGACTGGTGCGTGATTTGATGCGCCGAGTGGGAAGC
ATCGCTTCCATTGGCTGGGTCCTCTGTAGATCAGAAAGGAAGAGAGAAGG
TGAATTGTTCTCTCTTGTGGAGCTGGGCACTTTTCTCTTGCAGAACATTA
ATTCCCATGGTCTTTGGAATCTGGGGCTTGCATCAGTGACTCGCCCGCAT
CCCTCACCTTGACCCAGGAACTCTTGTCCTTGGTCTTAGACACAGAAGAT
GCTACTGGCTTGGTTCTAGGATCTTTGAACTTGGTGGTCATGCTACTGAG
TTCTCTGGTTCCTTGGCTTTTAAGTGTCGTATCAGGGGGTTCCTTAGCCT
TCATAATGATAATCCAATTTTCCTAATAACCCTTTTCTTGTTCTGTCAGC
CTATATATCCGATCTCTCTGGAGAGCTCTTACTAGTATAGTTAGGATCTT
CACAGATTCTCATTTCATCTTTGTATCCTATCAGGTATCACATGACTTAT
ATCTGTCCCATTATACAACCCATTCCTGCGACTATTTTGATACCCCGCTC
AGTTCACACCTTATCATTTTGCGTACTGTCCAAGCCCCGCTTCCCTTTGC
TATGTCCCTTTTTTCTTTTTTCTCCCCCCTTTTTACTCCCCTTTTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGCTCTCACGAGAAGCCCGTTCCCCAGAG
AAGACACATTAAGCAAATACTTGAGAACCTAAAATGTGACTGTAGTATTT
TAAGATAGAAACTTGGAATTTTAGAGCTGAAATCTGTCACTAAGGTTCAT
TAAATTAAGACCGTGTATGATAAAGTACACATTATCCTTACCAGGAGCCT
GAGACTACAGCAAATATCTAAAGATAGAGTTTTCCTCAAATTTACCATTT
TATTTCTATGGTCATACAGTATTTGGCTCAGACAATAGGCATCCATTGAG
TAAACAAATACTGTCATATTCATGCGTTAAAAATGGAGGCAAGGGGGCCT
GTTGAAAGTCAGTGTCAGAACTGGGGCTAGACAGCACACCATGGTGACTT
CCGGCTGCCACCAATGCACCTGGCTCTTCTCTCATCTGGGCAGGGACAGC
ATCAAATTCCCCAGCATCTTGACACAAGGCTCGGCTTTGAGACATTTCTG
CTCCCGTTTTAGACTTTAAAAGTTAATGTTGCATATCTTCGTTTTTGTCC
TCTACCATGGCGATCAAAGCAATTGCTGATACTGCGTTGATAGAATGTGT
AAAGACCCTGCATCTATGAGTTCCCACTTGGAATAGCTCACGTCTCTTTA
ATAGCTAATCCCATCCCTTCATCTTTCCGACAACTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_l19.g1 MSMg01no152_l19.g1 CHROMAT_FILE:
MSMg01no152_l19.g1 PHD_FILE: MSMg01no152_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:55 2005
         (527 letters)



>mm_chr3_65920826_65921752
          Length = 927

 Score =  973 bits (503), Expect = 0.0
 Identities = 521/527 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctctcacgagaagcccgttccccagagaagacacattaagcaaatacttgagaacct 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aggctctcatgagaagcccgttccccagagaagacacattaagcaaatacttgagaacct 668

                                                                       
Query: 61  aaaatgtgactgtagtattttaagatagaaacttggaattttagagctgaaatctgtcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aaaatgtgactgtagtattttaagatagaaacttggaattttagagctgaaatctgtcac 608

                                                                       
Query: 121 taaggttcattaaattaagaccgtgtatgataaagtacacattatccttaccaggagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 taaggttcattaaattaagaccgtgtatgataaagtacacattatccttaccaggagcct 548

                                                                       
Query: 181 gagactacagcaaatatctaaagatagagttttcctcaaatttaccattttatttctatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gagactacagcaaatatctaaagatagagttttcctcaaatttaccattttatttctatg 488

                                                                       
Query: 241 gtcatacagtatttggctcagacaataggcatccattgagtaaacaaatactgtcatatt 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gtcatacagtatttggcccagacaataggcatccattgagtaaacaaatactgtcatatt 428

                                                                       
Query: 301 catgcgttaaaaatggaggcaagggggcctgttgaaagtcagtgtcagaactggggctag 360
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cattcgttaaaaacggaggcaagggggcctgttgaaagtcagtgtcagaactggggctag 368

                                                                       
Query: 361 acagcacaccatggtgacttccggctgccaccaatgcacctggctcttctctcatctggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acagcacaccatggtgacttccggctgccaccaatgcacctggctcttctctcatctggg 308

                                                                       
Query: 421 cagggacagcatcaaattccccagcatcttgacacaaggctcggctttgagacatttctg 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 307 cagggacagcatcaaattccccagcatcttgacacaaggctcagctttgagacatttctg 248

                                                          
Query: 481 ctcccgttttagactttaaaagttaatgttgcatatcttcgtttttg 527
           |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctcctgttttagactttaaaagttaatgttgcatatcttcgtttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)