BAC Information

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BAC

Clone NameMSMg01-153C09
Chromosome3 (Build37)
Map Location 123,673,919 - 123,674,553
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153C09.T7 (MSMg01no153_c09.b1)MSMg01-153C09.TJ (MSMg01no153_c09.g1)
ACCAG354827AG354828
length717709
length of high quality
(start - end)
534 (182 - 715)636 (69 - 704)
definitionCHROMAT_FILE: MSMg01no153_c09.b1 PHD_FILE: MSMg01no153_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:27 2005CHROMAT_FILE: MSMg01no153_c09.g1 PHD_FILE: MSMg01no153_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGAGCCTACTGAAGGGCTGAGAAGCACTTTACAAAAATGTTCAGC
ATCCTTAATCATCAGGGAAATGCATATCAAAACAACCTTGAGATTCCACT
TCACACCAGTCAGAATGGCTAAGATGAGAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGATGGGATTG
CAAACTTGTACAACCACTCTGGAAATCAGTTTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACCGGAAGATCCAGCAATACCACTCCTGGGCATATAC
CCAGAAGATAATAAGAACACATGCTCCACTATGTTCATAGCAGCCTTATT
TATAATAGCCAGAAGCTGGGAAGAACCCAGATGTCCCTCAACAGAGGAAT
GGATACAGAAAATGTGGTACATTTACACAATGCAGTACTACTCAGCTATT
AAAAGCAATGATTTTATGAAATTCTTGGGCAAATGGATGTATCTGGAGGA
TATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACATGATATGA
ACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGACTACCAAAGATAC
AATTTGCAAAACACAAGAAAATCAACAAGAAGGAAGACCAATGTGTGGAT
ACTTCATTCTTTCTTAG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGCTGTCAGGCCCAAACATTAGTATGTCTCTACTT
GCTGAGGCATCTCACTGTTCTCTGTGACTTCTTTTCATGTTCATGTCTAT
TCACTTTGTCTTATGGCCCACTCTTTTAACCAGTGAAGTCTGTGTGAACA
TGGATTTGGAGTCATCCTTTGGCACCTGGTGCGCTCAACAATAGATATGC
AATTACAGACAGAAATTCTTCCCGGCCATAGAACCTATTAACAGTCAATA
GTTCAGAAGTAATGAATAGGACACAGGAAGTGGGGTGCTGACTATAGGTG
AGGACTCTTCAATGGGGCAGCTATAATGATAGCCTTATAAGTAGCCTTAT
CATGATGCAATGATACAGATTTGAAAGAAAATCTTTCTGGGGTCTGTTGG
TACCTCATTTCAAGGTCTATAGAAAAGATTCGTATTGAGTAATCTGCTCA
ATCCTAATAAATATTTTTAATATTATTGTATCTACAAGCTCTGAATTTTT
AATAATTCAAAACATCATTTTATCTCTGAACTTCCAATTTTCATATACTT
AAAGGTCTCTGCAGATCAAAATACTACGTTTCAGCTGAAGTGATTAAGAA
AACAGATGTGGTACCTAAGCTTTGTAATTTGCTCCAGCCTGGTGACACTC
TTGGGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_c09.g1 MSMg01no153_c09.g1 CHROMAT_FILE:
MSMg01no153_c09.g1 PHD_FILE: MSMg01no153_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:27 2005
         (636 letters)



>mm_chr3_123673919_123674953
          Length = 1035

 Score = 1145 bits (592), Expect = 0.0
 Identities = 625/636 (98%), Gaps = 1/636 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcaggcccaaacattagtatgtctctacttgctgaggcatctcactgttctctgtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgtcaggcccaaacattagtatgtctctacttgctgaggcatctcactgttctctgtgac 576

                                                                       
Query: 61  ttcttttcatgttcatgtctattcactttgtcttatggcccactcttttaaccagtgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttcttttcatgttcatgtctattcactttgtcttatggcccactcttttaaccagtgaag 516

                                                                       
Query: 121 tctgtgtgaacatggatttggagtcatcctttggcacctggtgcgctcaacaatagatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tctgtgtgaacatggatttggagtcatcctttggcacctggtgcgctcaacaatagatat 456

                                                                       
Query: 181 gcaattacagacagaaattcttcccggccatagaacctattaacagtcaatagttcagaa 240
           |||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 455 gcaactacagacagaaattctt-ccagccatagaacctattaacagtcaatagttcagaa 397

                                                                       
Query: 241 gtaatgaataggacacaggaagtggggtgctgactataggtgaggactcttcaatggggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtaatgaataggacacaggaagtggggtgctgactataggtgaggactcttcaatggggc 337

                                                                       
Query: 301 agctataatgatagccttataagtagccttatcatgatgcaatgatacagatttgaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agctataatgatagccttataagtagccttatcatgatgcaatgatacagatttgaaaga 277

                                                                       
Query: 361 aaatctttctggggtctgttggtacctcatttcaaggtctatagaaaagattcgtattga 420
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| 
Sbjct: 276 aaatctttctggggtctgttggtacctcatttcaaggtctacagaaaagatttgtattgg 217

                                                                       
Query: 421 gtaatctgctcaatcctaataaatatttttaatattattgtatctacaagctctgaattt 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 216 gtaatctgctcaatcctaataaatatttttaatattattatatctacaagctctgaattt 157

                                                                       
Query: 481 ttaataattcaaaacatcattttatctctgaacttccaattttcatatacttaaaggtct 540
           |||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 156 ttaacaattcaaaacatcattttatctctgaacttccgattttcatagacttaaaggtct 97

                                                                       
Query: 541 ctgcagatcaaaatactacgtttcagctgaagtgattaagaaaacagatgtggtacctaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctgcagatcaaaatactacgtttcagctgaagtgattaagaaaacagatgtggtacctaa 37

                                               
Query: 601 gctttgtaatttgctccagcctggtgacactcttgg 636
           ||||||||||||||||||| ||||||||||||||||
Sbjct: 36  gctttgtaatttgctccagtctggtgacactcttgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space:   641650
Effective search space used:   641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)