BAC Information

Click to search

BAC

Clone NameMSMg01-153N24
Chromosome3 (Build37)
Map Location 143,433,097 - 143,591,867
singlet/doubletdoublet
Overlap geneLOC100039938
Upstream geneGtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik, EG668889, EG621809
Downstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153N24.T7 (MSMg01no153_n24.b1)MSMg01-153N24.TJ (MSMg01no153_n24.g1)
ACCAG355335AG355336
length732774
length of high quality
(start - end)		690 (41 - 730)355 (78 - 432)
definitionCHROMAT_FILE: MSMg01no153_n24.b1 PHD_FILE: MSMg01no153_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:21 2005CHROMAT_FILE: MSMg01no153_n24.g1 PHD_FILE: MSMg01no153_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,433,097 - 143,433,782)(143,591,513 - 143,591,867)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTTTCCTATCCATCCTGGCCATTTTAGGGTTGCTTGAGTGGTTTGTTAG
GAACATATGATAAAAGACATTAGCATCAAGTTCTGGTACTGTAGGGGAGA
AGGGCTTTAATTAGCATAGATCTGCTCTACTTTAGATTCTTAATAAATCA
TATACTCCAACATTATTTGAGGGTTTCTGTACTTCTTTCTCCCCTCCCCA
TACCCATATTGACTTCTCAAGTGAGGCCCCACATACAAGTCCTTTCCTCA
CATCTGAGAGAAGCCGAGCTTCTGAAGACCCATGTTCTGCTGGAAATGAC
ACTCAGCATCTGTGTGGCACAGGACAAACATTTCAAGGTACACTCGCTGT
GGCGCCAGCATAATGACCCAATTTAGCAAAACTGCACATTGCCAGACAGC
TTTCCAGGTGAAGACACTGCCTTACAGGGACTTAGTAGACAAAGGACAGA
GCTGGAGCCAGGCTATGTGTCTTAAAAACAGCAATCCTATCCATTCACCC
CATGAGTCTGGGTTCTACCAGAGGAATGAGCTTATGACCATGTGACTCTC
AAAAGCCCACATGCTCTAGGAAAAGTGGTTTTTAAAATCAAGTTAATTTG
ACTGGTCTATGTTTCTCTGACTGTCTTACCAGTTTATAAGGTTGATAAGA
CACTCAACCTTAACACTTAATTTTCTGTGATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTAACATTTCAGTCCAATG
AGATTGTGCTTTCACTGACACAGCTGTGAACAGAGGGTAGAGTGAATGCA
AAGGGTGGTAACTGAGAAATTCTTGGATTTACCCTAGGCAGGGGATTAAT
TGTATCTCCCCATCCAAGGACAGATAGATATCTGAAGCCAGCACTATCAG
GAGTAAACACCAGAGCCTGAAATCTTTACCTTCACAAAAAAGGTCTATGA
TTATTTCTTTGATTTATTGAGATGATTAAAGTCAAAGTTCAGGAAGAGAT
ACTTGTATTCTTTCTCTGTCTCTTTCTCTCTGTTGTACATGCATACTCTC
TTCCGTGTGTGTGTGTGCGCGTGTGTGTGTGTGCGTGTGTGTGCGCCTGC
TATCTTTCCACCCCCACCCTTCCCTTCTTCTTTCTTTCTTCCCCTTTCCC
CCCCATTCTCTTCTATTTGTCACCCCATCATACCACCCCCCCCCCCCATC
TACTCACCTCTCCTTCTCCCTTTCTTTTTCCTTTTCCATTTTCGATTATC
CCTCCCCCCCTATTCCCACCTCTTTTCTCCTTATTTTTCCCCCCCTCCCC
TTCTCCTCTTTTCTCCCCCTCTCCCTCTCTTTCTCCCTTTCCCAATCACA
TTCAACTCTTTTAATTTAACATCTCCCTACCCTCATCTCCCCTCCCCCTC
CCATACTATCTTTTTCCTCCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_n24.b1 MSMg01no153_n24.b1 CHROMAT_FILE:
MSMg01no153_n24.b1 PHD_FILE: MSMg01no153_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:21 2005
         (690 letters)



>mm_chr3_143432893_143433982
          Length = 1090

 Score = 1249 bits (646), Expect = 0.0
 Identities = 676/686 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtttcctatccatcctggccattttagggttgcttgagtggtttgttaggaac 64
           ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttccaatctatcctggccgttttagggttgcttgagtggtttgttaggaac 264

                                                                       
Query: 65  atatgataaaagacattagcatcaagttctggtactgtaggggagaagggctttaattag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatgataaaagacattagcatcaagttctggtactgtaggggagaagggctttaattag 324

                                                                       
Query: 125 catagatctgctctactttagattcttaataaatcatatactccaacattatttgagggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catagatctgctctactttagattcttaataaatcatatactccaacattatttgagggt 384

                                                                       
Query: 185 ttctgtacttctttctcccctccccatacccatattgacttctcaagtgaggccccacat 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 ttctgtacttctttctcccctccccatacccagattgacttctcaagtgaggccccacat 444

                                                                       
Query: 245 acaagtcctttcctcacatctgagagaagccgagcttctgaagacccatgttctgctgga 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 acaagtcctttcctcacatctgagagaagtcgagcttctgaagacccatgttctgctgga 504

                                                                       
Query: 305 aatgacactcagcatctgtgtggcacaggacaaacatttcaaggtacactcgctgtggcg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 aatgacactcagcatctgtgtggcacaggacaaacatttcaaggtacactcactgtggcg 564

                                                                       
Query: 365 ccagcataatgacccaatttagcaaaactgcacattgccagacagctttccaggtgaaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccagcataatgacccaatttagcaaaactgcacattgccagacagctttccaggtgaaga 624

                                                                       
Query: 425 cactgccttacagggacttagtagacaaaggacagagctggagccaggctatgtgtctta 484
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 cactgcctcacagggacttagtggacaaaggacagagctggagccaggctatgtgtctta 684

                                                                       
Query: 485 aaaacagcaatcctatccattcaccccatgagtctgggttctaccagaggaatgagctta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaacagcaatcctatccattcaccccatgagtctgggttctaccagaggaatgagctta 744

                                                                       
Query: 545 tgaccatgtgactctcaaaagcccacatgctctaggaaaagtggtttttaaaatcaagtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgaccatgtgactctcaaaagcccacatgctctaggaaaagtggtttttaaaatcaagtt 804

                                                                       
Query: 605 aatttgactggtctatgtttctctgactgtcttaccagtttataaggttgataagacact 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 805 aatttgactggtctatgtttctctgactgtcttaccagtttataaggttgataagaaact 864

                                     
Query: 665 caaccttaacacttaattttctgtga 690
           ||||||||| ||||||||||||||||
Sbjct: 865 caaccttaaaacttaattttctgtga 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no153_n24.g1 MSMg01no153_n24.g1 CHROMAT_FILE:
MSMg01no153_n24.g1 PHD_FILE: MSMg01no153_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:21 2005
         (355 letters)



>mm_chr3_143591341_143592095
          Length = 755

 Score =  640 bits (331), Expect = 0.0
 Identities = 349/355 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttctaacatttcagtccaatgagattgtgctttcactgacacagctgtgaacagaggg 60
           |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct: 527 ctttctaacatttcagtccagtgagattgtgctttctctgacacagccgtgaacagaggg 468

                                                                       
Query: 61  tagagtgaatgcaaagggtggtaactgagaaattcttggatttaccctaggcaggggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tagagtgaatgcaaagggtggtaactgagaaattcttggatttaccctaggcaggggatt 408

                                                                       
Query: 121 aattgtatctccccatccaaggacagatagatatctgaagccagcactatcaggagtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aattgtatctccccatccaaggacagatagatatctgaagccagcactatcaggagtaaa 348

                                                                       
Query: 181 caccagagcctgaaatctttaccttcacaaaaaaggtctatgattatttctttgatttat 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 347 caccagagcctgaaatctttaccttcacaaaaaaggactatgattatttctttgatttat 288

                                                                       
Query: 241 tgagatgattaaagtcaaagttcaggaagagatacttgtattctttctctgtctctttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgagatgattaaagtcaaagttcaggaagagatacttgtattctttctctgtctctttct 228

                                                                  
Query: 301 ctctgttgtacatgcatactctcttccgtgtgtgtgtgtgcgcgtgtgtgtgtgt 355
           |||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 227 ctctgttgtacatgcatactctcttccgtgtgtgtgtgtgtgtgtgtgtgtgtgt 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |