BAC Information

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BAC

Clone NameMSMg01-154J11
Chromosome3 (Build37)
Map Location 49,400,801 - 49,401,325
singlet/doubletsinglet
Overlap genenone
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579
Downstream geneLOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11, EG621304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154J11.T7 (MSMg01no154_j11.b1)MSMg01-154J11.TJ (MSMg01no154_j11.g1)
ACCAG355841AG355842
length705707
length of high quality
(start - end)
229 (77 - 305)525 (72 - 596)
definitionCHROMAT_FILE: MSMg01no154_j11.b1 PHD_FILE: MSMg01no154_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:16 2005CHROMAT_FILE: MSMg01no154_j11.g1 PHD_FILE: MSMg01no154_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXATCGAATCCGAGCCGCGGAANTCC
GAATTTCGTTACGCCGAGTCAAGGNCATCTGAGATTAAAGGTATGGTGGA
ACACACCTTTACCCTGGGATACACCTTCTGCTGAAGACCATATAAGGACA
TTGGAAAAAGGGAGTCTTGCTCTTGCTTCCTCGCCTGCTTGCCCTGTGGG
ACTGAGTAACTGCTTGATCCTTGGACTTCCATTCACAGCTATTTCTGAAC
CATTGTTGGGAATTAGACTGCAGACTGTAAGTCATCAATAAATTCCTTTA
CTATATTCACTCCATTTATAAGNNCTGNGACTCTAGATAAGATACAACTT
GCCACCCCCCTGAAATTCAAGGAGAACGAAGACTAAAGTGTGGACAATTT
ACCCTTTCTTAGAAATGGGAACAAAACACCCATGGAAGGAGTTACAGAGA
CAAAATTTGGAGCTGTGACGAAAGGACGGACCATCTAGTGATTTCCATAT
GCAGGGATCCATCCCATAATCAGCTTCCAAATGCTGACACCATTGCATAC
ACTAGCAAGATTTTGCCGAAAGGACCCAGATATAGCTATCTCTTGTGAGA
CTATGCCGGGCCCTATCAAACACAGAAGTGTATGACCACTTTTTTCTATT
GTGCGGACCACACGCCCCCCAATGGTTTAGTTAGAGTAAACACCTCAGGA
GCTAA
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGAGCAGTCTTTGGATCAACACATCTTT
AAGCCTTGAGATCATATCATGTCCATGAAGCACTGCCCCAACATGACTGT
GGTCAGGAACAAAAAGCTTGGAAATTAATTCTTAAACAAACTCCCCCCCA
CCCCCTTGCTATTGGTTTAGTGACTCTCCAATTAATTCACCCCAAATTTT
TATTAGCATTAGTAGCCGATGTGAATGAGATTCAGAGCACAATATCAATA
AAGCTTGTCCTGATGAAATGTATAGTTTAATATGGGAGATGTTTTAAAAC
AGAAATATGTAACATGTGTCCTTGGAGTTTGATTATAAAGTCTTGATCAA
ATAGAGCTTTGCTCAATCCCACTCAGGAAGTCCTTTTATGACTGGCTATA
TTTCAAAATGCCCATGTATATTTCCTGTCACAAATGTTTGTTTTGCAATT
GAGAAATGTTCTTTTATTTTTCTTTTGATTATGATGGATTTCAACCCTAG
TAGAAATTAACTTTGAGGTCTCCATTTTTCTAGGAGGGGGAAAATTCCGG
GTCATGAGAGGAAAAGCCCAGACTTTGACTAGTGAGGAGCCTGTCCAATT
TAATAACTTGATAATCATGTATTCCCTATAGGTTTCCTGTACGGATTAAT
TACACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_j11.g1 MSMg01no154_j11.g1 CHROMAT_FILE:
MSMg01no154_j11.g1 PHD_FILE: MSMg01no154_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:16 2005
         (525 letters)



>mm_chr3_49400601_49401525
          Length = 925

 Score = 1015 bits (525), Expect = 0.0
 Identities = 525/525 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagcagtctttggatcaacacatctttaagccttgagatcatatcatgtccatgaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 atgagcagtctttggatcaacacatctttaagccttgagatcatatcatgtccatgaagc 666

                                                                       
Query: 61  actgccccaacatgactgtggtcaggaacaaaaagcttggaaattaattcttaaacaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 actgccccaacatgactgtggtcaggaacaaaaagcttggaaattaattcttaaacaaac 606

                                                                       
Query: 121 tcccccccacccccttgctattggtttagtgactctccaattaattcaccccaaattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tcccccccacccccttgctattggtttagtgactctccaattaattcaccccaaattttt 546

                                                                       
Query: 181 attagcattagtagccgatgtgaatgagattcagagcacaatatcaataaagcttgtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 attagcattagtagccgatgtgaatgagattcagagcacaatatcaataaagcttgtcct 486

                                                                       
Query: 241 gatgaaatgtatagtttaatatgggagatgttttaaaacagaaatatgtaacatgtgtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gatgaaatgtatagtttaatatgggagatgttttaaaacagaaatatgtaacatgtgtcc 426

                                                                       
Query: 301 ttggagtttgattataaagtcttgatcaaatagagctttgctcaatcccactcaggaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttggagtttgattataaagtcttgatcaaatagagctttgctcaatcccactcaggaagt 366

                                                                       
Query: 361 ccttttatgactggctatatttcaaaatgcccatgtatatttcctgtcacaaatgtttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccttttatgactggctatatttcaaaatgcccatgtatatttcctgtcacaaatgtttgt 306

                                                                       
Query: 421 tttgcaattgagaaatgttcttttatttttcttttgattatgatggatttcaaccctagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tttgcaattgagaaatgttcttttatttttcttttgattatgatggatttcaaccctagt 246

                                                        
Query: 481 agaaattaactttgaggtctccatttttctaggagggggaaaatt 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agaaattaactttgaggtctccatttttctaggagggggaaaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)