CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCAATATCCAAAAGAGACACAGATTTCTCTCACCTTTCACTGGAGTAA
GAAATCCATATTTAAAAGGCTCATTCTGAAAAAACAAACGAACAAAAACC
AGAATTGCATGACATAATCTTAAGTGATAATATTAGGCATGTTGAGTAGT
TCTTAACAATATCTATAGATAAAACTTTAATTAGTGAAACCTCTTGGAAT
TACAAACCAACCTAAAACCTAAAATAGATGAATAGACAAAGACTTGAGAT
CCACTGAAGCAACTGAAAGATGATGTAGAATAGTGACGGATTAAAGATAC
AGTTCATTTCTGCATCTCCACTAATAGGAAACAAAGGCATGGTGGGTAGC
ATGAAAATCCATAAAAAGAAAGATTACAGAGTACATCATATACAGAGAGT
CCAAGACAAGTCCAGAAATATTGAACTTCAAAGATGTTGTTGGTGTCCTG
AGCTATTCAGCACTCGATACAGACTCTGGGAGCATGTGAGAAAGGCCACA
ACAATTCATCTGAACACTGCTGTAAGCTCTTTTAGTACCCTCTTCCTAGG
CCTCATTGGTCCCAAGAAAGTGTCTCTTCTAAACAAACTTCTTGATTGTC
TGGCATTGTCTGTATCAGCAATCCTTGGTCTCTCAGGCAG

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
CGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAAGATCCAG
CAATACCTCTACTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTGTAATAGCCAGAAG
CTGGAATGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTACAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGAACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTTGAAAAGT
GGATATTACCCCATAACCTAGGATACCCCAGAATTAAGATACTATTTGG

Query= MSMg01no154_o08.b1 MSMg01no154_o08.b1 CHROMAT_FILE:
MSMg01no154_o08.b1 PHD_FILE: MSMg01no154_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:39 2005
         (544 letters)



>mm_chr3_45366756_45367701
          Length = 946

 Score = 1009 bits (522), Expect = 0.0
 Identities = 540/546 (98%), Gaps = 2/546 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagaca-cagatttctctcacctttcactggagtaa-gaaatccatatttaaaaggct 58
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 aagagacaacagatttctctcacctttcactggagtaaagaaatccatatttaaaaggct 260

                                                                       
Query: 59  cattctgaaaaaacaaacgaacaaaaaccagaattgcatgacataatcttaagtgataat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattctgaaaaaacaaacgaacaaaaaccagaattgcatgacataatcttaagtgataat 320

                                                                       
Query: 119 attaggcatgttgagtagttcttaacaatatctatagataaaactttaattagtgaaacc 178
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 321 attaggcatgttgagtagttcttaacaatatctataaattaaactttaattagtgaaacc 380

                                                                       
Query: 179 tcttggaattacaaaccaacctaaaacctaaaatagatgaatagacaaagacttgagatc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttggaattacaaaccaacctaaaacctaaaatagatgaatagacaaagacttgagatc 440

                                                                       
Query: 239 cactgaagcaactgaaagatgatgtagaatagtgacggattaaagatacagttcatttct 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgaagcaactgaaagatgatgtagaatagtgacggattaaagatacagttcatttct 500

                                                                       
Query: 299 gcatctccactaataggaaacaaaggcatggtgggtagcatgaaaatccataaaaagaaa 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 gcatctccactaataggaaacaaaggcatggtgggtagcatgaaaatccataaagagaaa 560

                                                                       
Query: 359 gattacagagtacatcatatacagagagtccaagacaagtccagaaatattgaacttcaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattacagagtacatcatatacagagagtccaagacaagtccagaaatattgaacttcaa 620

                                                                       
Query: 419 agatgttgttggtgtcctgagctattcagcactcgatacagactctgggagcatgtgaga 478
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatgctgttggtgtcctgagctattcagcactcgatacagactctgggagcatgtgaga 680

                                                                       
Query: 479 aaggccacaacaattcatctgaacactgctgtaagctcttttagtaccctcttcctaggc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggccacaacaattcatctgaacactgctgtaagctcttttagtaccctcttcctaggc 740

                 
Query: 539 ctcatt 544
           ||||||
Sbjct: 741 ctcatt 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 946
Length adjustment: 10
Effective length of query: 534
Effective length of database: 936
Effective search space:   499824
Effective search space used:   499824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)