BAC Information

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BAC

Clone NameMSMg01-155F05
Chromosome3 (Build37)
Map Location 61,610,634 - 61,611,200
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040501, EG666853, P2ry1, Rap2b, LOC666891
Downstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155F05.T7 (MSMg01no155_f05.b1)MSMg01-155F05.TJ (MSMg01no155_f05.g1)
ACCAG356364AG356365
length751790
length of high quality
(start - end)
590 (45 - 634)283 (80 - 362)
definitionCHROMAT_FILE: MSMg01no155_f05.b1 PHD_FILE: MSMg01no155_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:12 2005CHROMAT_FILE: MSMg01no155_f05.g1 PHD_FILE: MSMg01no155_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCATGGCGATATTTGGAAACCACAGATAAACCTCCTTCCATATA
AAGCCTAGCGAAATAGAGCTTTACTGCATTGCATCTTCAGTTAAGAGTAA
TTGTTTCAGAAAGAAATTTTAAATATTAAAGCAAAACTAGGGTAATATAG
TTAAGAATGAAAATATGTAGGTCCTAAAATTTCTATTCATACCAGCTTCA
ACACTTTTAGAAGAACTACTCATGTCAAGAAATTATCTTCTGAGATAGAC
AAGAAAAACTTGTGTAGTTAGGTCTGAACTTGGATCTTATGTCCATAACT
TACTAATAAGGAGGACTTGGGAGTTTGACACATTTCTTTCAACCAGTTGT
GATTGTTAGTAAAATAAATAAATAAATAAACAAATAAATAAATAAGAATA
TTGTTAGACAAATAGGAAGCTTTTACAAGTGCTAACCAAGAGCTAACCAA
GATAAACTCATTTTAAATGCTAATTTGATTGTCACAGCCATAAAAATATA
GTATTGATCTCAAAAGTCAGAGTTAAAAATTTATATAAAGGAAAAATTAT
AAGACAAAACTTTACTCTTTTTTAAGTGAGTTTCTCACAATGTTAATTGT
ATTTAAATAATTTTAGAAATTTAAAATGAAATGAAAATAAGGCATCTATT
TATAGAACATTATGACCGAATTTTGAGGCACATATCTGATTAGGCATAAG
A
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAATACACATAAAGCCAGGAG
TAGTAATATATACCGTACTCACAGTGTTTCTATTGTGAGAGGAGAGGTAG
AAACAGGGGTGTTGGGAATTGGTTCTAATGTATTGTCTTATTTCGGCTCC
CCTAAAACCCTGCTTCCAGACTGGAGGGTTCCTGCCCCCAGGTGGTTTCA
ATTGGTAATAAATAATTGCCGCACAGCCATTGGCTGGGAAGGACTTTTAG
ATTTTGAGGGCAAGATATGGAAAGAGGAGAGTAGAGGGAGGAGAGGAATC
GCCATGACTGGCAAGGAGAAAGATGAAATTTAAGGGCCTGCCCGCATGTA
AGAATACAGGAAAGTGTCCCCTAGAGGCCCCTTCCCCTATTGGGTCTGGC
GCAGCAGAGATGAAATGTTGATTTTCCACTGTTGACGCCTCCACCCCCCC
ACCGCTACCAGCCCTGCTCCCCCCGCCACCCCCCGACAGCCTTCGTCCCC
CCCCCTCCCTCCCCCCTACCCCCCCCCCCCCTCCATCTCCCCCCTCTGTG
TCCTCCCTCCCCTCCTCTCCTCTCTCCTCTCTCCCTCCCCCCCCCCCCCG
CCCCCCCCCCCCCCCGTTCCCCCCCCTCCCCCCTCACTTATCTCCCCCCT
CCATCCCACATCTCTCCCTCCCTCCTCCCCCCCCCCCCCCCCCTCTCTTC
TTCCTCCACTCGGCCCCGCCTTCTCGGCCCCTCTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_f05.b1 MSMg01no155_f05.b1 CHROMAT_FILE:
MSMg01no155_f05.b1 PHD_FILE: MSMg01no155_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:12 2005
         (590 letters)



>mm_chr3_61610634_61611623
          Length = 990

 Score = 1031 bits (533), Expect = 0.0
 Identities = 560/571 (98%), Gaps = 4/571 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccatggcgatatttggaaaccacagataaacctccttccatataaagcctag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaattcttccatggcgatatttggaaaccacagataaacctccttccatataaagcctag 508

                                                                       
Query: 65  cgaaatagagctttactgcattgcatcttcagttaagagtaattgtttcagaaagaaatt 124
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 507 caaaatagagctttactgcattgcatcttcagttaagagtaattgtttcagatagaaatt 448

                                                                       
Query: 125 ttaaatattaaagcaaaactagggtaatatagttaagaatgaaaatatgtaggtcctaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttaaatattaaagcaaaactagggtaatatagttaagaatgaaaatatgtaggtcctaaa 388

                                                                       
Query: 185 atttctattcataccagcttcaacacttttagaagaactactcatgtcaagaaattatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atttctattcataccagcttcaacacttttagaagaactactcatgtcaagaaattatct 328

                                                                       
Query: 245 tctgagatagacaagaaaaacttgtgtagttaggtctgaacttggatcttatgtccataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctgagatagacaagaaaaacttgtgtagttaggtctgaacttggatcttatgtccataa 268

                                                                       
Query: 305 cttactaataaggaggacttgggagtttgacacatttctttcaaccagttgtgattgtta 364
           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 267 cttactaataatgaggacttggaagtttgacacatttctttcaaccagttgtgattgtta 208

                                                                       
Query: 365 gtaaaataaataaataaataaacaaataaataaataagaatattgttagacaaataggaa 424
           ||||||||||||||||||||||    |||||||||||| |||||||||||||||||||||
Sbjct: 207 gtaaaataaataaataaataaa----taaataaataaggatattgttagacaaataggaa 152

                                                                       
Query: 425 gcttttacaagtgctaaccaagagctaaccaagataaactcattttaaatgctaatttga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gcttttacaagtgctaaccaagagctaaccaagataaactcattttaaatgctaatttga 92

                                                                       
Query: 485 ttgtcacagccataaaaatatagtattgatctcaaaagtcagagttaaaaatttatataa 544
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 91  ttgtcacagccataaaaatatagtattgatctcaaaagtcagagttaaaattttatataa 32

                                          
Query: 545 aggaaaaattataagacaaaactttactctt 575
           |||||||||||||||| ||||||||||||||
Sbjct: 31  aggaaaaattataagaaaaaactttactctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)