TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGTATTATTAATAAACGTGTCTTTTGAAAGGTTAAACTTACAGG
TTAACTTTCCAGCAGCCATATGGTGGCTCATAACTATACATAACTGCAGG
TGATCTAATGCCCCCTTTTTACTTTATAGTCACCAAGCATACATGTGGCA
CATACATATAGAAGCAACACCCAAATGCGTAAAATAAATCTTAAAGTTCT
AGCCCTAATTGCGCTCTGTCTTTTGGGGTCTTCCCAACCACTTAATCGAT
CCTCTTGAGGAAGAGTTAGTAACGAAGTTGCCTGAGTGTTAGTGAGATGG
TGGAGCTTGCCACCAAGCCTGATGACCAGAGCTCGGTTCCTGGGATCCCC
GTGGCGAAAGAACACAAGTGACTCCCACAAGTTGTCCCATGATCTACACA
CACCAAAGAAAGGAAGGGATTGATTGAGAGGTTAAAGAGATGGTGTGATC
GTTAAGAGCACTGACTGCTTGCTCTTTCAGAGAATCTGGGTCATTGGTTG
CGTACAAATGCAATGTTAATTGGACAGATTTCTCGTTTAATTGTTAAGAA
AAGTGGATATATTTTTTTTTCAGTACATGATCCTGACATCAGCGAACCGC
AATTAACAACACAAGTGAAATACCTCCCTAATGGGTCACCAAGACAAACT
CTACCATCCTCTATGTACCATT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTCTTTCTGACTTACTCTGT
GAGACAAAGGTCACAGTAATAATTTGTGTTCTTTTTGCTCTATTACAAAA
TGGTGACCAATCACTGTTAAATGGATAGTGTTTGTGTGTGTGTTTATTTG
TGTGTATGGGTATTTGNNCNNNNNNNNNNCNTNNNNNCCCCCCCCCCCCT
CTTCCCCCCACCCACCCNNCCCCCNCTTTTTTTTCCTCCTCTTTCCCCCT
CCCCCCTCCCCTTTTTTTTCCCTTTCTTTCCCCATCTATCCCCAACACCC
CCTTATTTTCCCCTTCTATACTCCCCCACCTTATCCCTACTTTACCTTCT
CTTCTCCCCCCCCCCCCTCTCTTTCTCTTTTCACTCCCCTTTTTTCCCCT
CCCCCCCCTCTTCTTCTTTTCTCCTTCTCCCCCTTTTTTTTCCCCCTTTT
CTCCCCCTCACTAACTTCCACCCTATCCCTCAATTTTCCATTTCCGCCAA
ATTGCGCTTTTCTCACCCCATTCCTCCCATTATTCCGCCTTATCGACCGT
TTCTTGCATTTTCCCCTACTTATATTACCCTTCTTATCTATCCTATCCTT
CCTCTCTCCCCCCCCCCCTCCTCTCATCCTCATCTCCCCTCTTCTCTCTC
TCCTCTACTCCTCACCCATATACCGCTGCCCCCTTGTTCCCTCCTCTTCC
CCTCTTGTATTTTTTCCCCTCCCTCCCCCGTTGCTTTTTCTCCCCTTCCT
TATC

Query= MSMg01no155_f10.b1 MSMg01no155_f10.b1 CHROMAT_FILE:
MSMg01no155_f10.b1 PHD_FILE: MSMg01no155_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:13 2005
         (580 letters)



>mm_chr3_14538444_14539423
          Length = 980

 Score = 1075 bits (556), Expect = 0.0
 Identities = 571/576 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgtattattaataaacgtgtcttttgaaaggttaaacttacaggttaacttt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgtatcattaataaacgtgtcttttgaaaggttaaacttacaggttaacttt 264

                                                                       
Query: 65  ccagcagccatatggtggctcataactatacataactgcaggtgatctaatgcccccttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccagcagccatatggtggctcataactatacataactgcaggtgatctaatgcccccttt 324

                                                                       
Query: 125 ttactttatagtcaccaagcatacatgtggcacatacatatagaagcaacacccaaatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttactttatagtcaccaagcatacatgtggcacatacatatagaagcaacacccaaatgc 384

                                                                       
Query: 185 gtaaaataaatcttaaagttctagccctaattgcgctctgtcttttggggtcttcccaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 gtaaaataaatcttaaagttctagccctaattgcgctctgtcttttggggtcttcccaat 444

                                                                       
Query: 245 cacttaatcgatcctcttgaggaagagttagtaacgaagttgcctgagtgttagtgagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacttaatcgatcctcttgaggaagagttagtaacgaagttgcctgagtgttagtgagat 504

                                                                       
Query: 305 ggtggagcttgccaccaagcctgatgaccagagctcggttcctgggatccccgtggcgaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtggagcttgccaccaagcctgatgaccagagctcggttcctgggatccccgtggcgaa 564

                                                                       
Query: 365 agaacacaagtgactcccacaagttgtcccatgatctacacacaccaaagaaaggaaggg 424
           |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaagagaaatgactcccacaagttgtcccatgatctacacacaccaaagaaaggaaggg 624

                                                                       
Query: 425 attgattgagaggttaaagagatggtgtgatcgttaagagcactgactgcttgctctttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attgattgagaggttaaagagatggtgtgatcgttaagagcactgactgcttgctctttc 684

                                                                       
Query: 485 agagaatctgggtcattggttgcgtacaaatgcaatgttaattggacagatttctcgttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agagaatctgggtcattggttgcgtacaaatgcaatgttaattggacagatttctcgttt 744

                                               
Query: 545 aattgttaagaaaagtggatatatttttttttcagt 580
           ||||||||||||||||||||||||||||||||||||
Sbjct: 745 aattgttaagaaaagtggatatatttttttttcagt 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no155_f10.g1 MSMg01no155_f10.g1 CHROMAT_FILE:
MSMg01no155_f10.g1 PHD_FILE: MSMg01no155_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:13 2005
         (143 letters)



>mm_chr3_14673800_14674342
          Length = 543

 Score =  253 bits (131), Expect = 3e-72
 Identities = 137/139 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttctttctgacttactctgtgagacaaaggtcacagtaataatttgtgttctttttg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 339 cacttctttctgacttactctgtgagacaaaggtcacagtaatgatttgtgttctttttg 280

                                                                       
Query: 61  ctctattacaaaatggtgaccaatcactgttaaatggatagtgtttgtgtgtgtgtttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 279 ctctattacaaaatggtgaccaatcactgttaaatggatagtgtttgtgtgtgtgcttat 220

                              
Query: 121 ttgtgtgtatgggtatttg 139
           |||||||||||||||||||
Sbjct: 219 ttgtgtgtatgggtatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)