BAC Information

Click to search

BAC

Clone NameMSMg01-155G22
Chromosome3 (Build37)
Map Location 6,225,577 - 6,225,889
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570
Downstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155G22.T7 (MSMg01no155_g22.b1)MSMg01-155G22.TJ (MSMg01no155_g22.g1)
ACCAG356441AG356442
length757755
length of high quality
(start - end)
523 (74 - 596)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no155_g22.b1 PHD_FILE: MSMg01no155_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:20 2005CHROMAT_FILE: MSMg01no155_g22.g1 PHD_FILE: MSMg01no155_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAAT
TCATTGTTTTTTTACATCAGAAGTACTCCATTGTGTAAATGTACCACATT
TTCTGTATCCATTCCTCTGTTGAGCGAAATCTGGATTCTTTCCAGCTTCT
GGCTCTTATAAATAAGGCTGCTATGAACATAGTGGAGTATGTGTCCTTAT
CACAAGTTGGAATATATTCTGGGTATATGTCTAGGAGTAGTATTGCTAGA
TCTTCTGGTAGTACTCTGTTCAGTTTTCTGAGGAACCACCAAACTGATTT
CCAGAGTAGTTGTACCAGCTTGCAATCCTACCCACAATGAAGGAGTGTTC
CTCTTTCTCCACATCCTTGCCAGCATCTCCTGTGATCTGAATTTTTTATC
TTAGCAGTTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTATGATTTG
CATTTCTGTGAGGATTAAGGATTTTGAATAGTTGAAAATAACTCTTTTCT
ATTAGCGACATTTAGCTTTATTTTCTATAGTGACTATCTATCATCTGTCG
CTTTGAGGTTTTTATCAATTTGAATATAATGCATATATGTGAATGTGTGT
GTGTGCGCGTGTGTGCGTTCCCATTTTTCCCTTCACCCGTATGTCCCCGA
TTGCCCTTCCATAAGCCCTGCGCCGATCTTATAACAGTACCCTATTCATT
ACCCCTCCTTTTTTTTTCCCATTACCCCCCCCCCTCCTCCCTTTTTTGCC
CCCCTTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAACAGTAGGCTTCTTGTATTTTCATGGGCATA
TCTTTCTTTCAGTTTGGGAATTTTTTTTCTCTAATTTTTTTTGATGATAT
TTACTGGCCCTTTAAATTGGAAATCTACACTCTCTTCTATACCTATTATC
TTTAGGTTTGGTCTCCTAATTGTGTCCTGGATTTCCTGGATGTTTAGGAT
TAGGGTATTTTTTTGCATTTTGAGTTTTCTTTGATTGTTGTGTCCATGTT
TTCTATTGTATCTTCTGAACCTGATTTTCTCTCTTCTATCTCTTGTATTC
TGTTGCTGATGTTTCTATCATAGCTCCTGACTTCTTTCCTATGTTTTCTA
TCTCCTGAGTTTTCTCCCTTTGTGATTTCTTCATTGTTTCTACTTCCATT
TTTACATCTTGGATGCTTTTGTTCATTTTCTGGGCCTGTGCGATTGTGTT
TTCCCGCAACTCTTTAAGGGACCTCTATGTTTCCCCTTTAAGGGTTTCCA
CTTGTTCACCTGTGTCCACCCGTATTTCCTTTACGGCCTCACCTATTTAT
TTCTTACCGATTTCCATCTTTTTTTTTACACCCGTACCTTTTTTTGCCCC
TCCGCTTTTCCGCTTTTTTTGCCGTTTTTTTTCCCCGCCCCGTTTTATCC
CCTCCCTCCGCCCACGCCCCTTTTTCCCCGTTTCTTTTTTCCTTTTTTTC
CCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_g22.b1 MSMg01no155_g22.b1 CHROMAT_FILE:
MSMg01no155_g22.b1 PHD_FILE: MSMg01no155_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:20 2005
         (523 letters)



>mm_chr3_6224967_6225889
          Length = 923

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 211 aaccaccaaactgatttccagagtagttgtaccagcttgcaatcctacccacaatgaagg 270
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 923 aaccaccaaactgatttccagagtggttgtaccagcttgcaatcctacccacaatgaagg 864

                                                                       
Query: 271 agtgttcctctttctccacatccttgccagcatctcctgtgatctgaattttttatctta 330
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 863 agtgttcctctttctccacatccttgctagcatctcctgtgatctgaattttttatctta 804

                                                                       
Query: 331 gcagttctgactggtgtgaggtggaatctcagggttgttatgatttgcatttctgtgagg 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gcagttctgactggtgtgaggtggaatctcagggttgttatgatttgcatttctgtgagg 744

                                                                       
Query: 391 attaaggattttgaatagttgaaaataactcttttctattagcgacatttagctttattt 450
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 743 attaaggattttgaatagttgaaaataactcttttctattagtgacatttagctttattt 684

                                                                       
Query: 451 tctatagtgactatctatcatctgtcgctttgaggtttttatcaatttgaatataatgca 510
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 683 tctatagtgactatctatcatctgtcgttttgaggtttttatcaatttgaatataatgca 624

                        
Query: 511 tatatgtgaatgt 523
           |||||||||||||
Sbjct: 623 tatatgtgaatgt 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)