Query= MSMg01no155_h02.b1 MSMg01no155_h02.b1 CHROMAT_FILE:
MSMg01no155_h02.b1 PHD_FILE: MSMg01no155_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:21 2005
(508 letters)
>mm_chr3_109929368_109930276
Length = 909
Score = 804 bits (416), Expect = 0.0
Identities = 475/506 (93%), Gaps = 22/506 (4%)
Strand = Plus / Plus
Query: 5 gaattctttctctaggatggcctgttgtcttctcagctggtttcatcttcctcacactta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gaattctttctctaggatggcctgttgtcttctcagctggtttcatcttcctcacactta 283
Query: 65 ttcagtcttttctaccaaagtactgattctccttcatacaaatcaacacagaggaactgc 124
|||||||||| |||||||||||||| |||| ||||||||||||||||| |
Sbjct: 284 ttcagtctttcctaccaaagtactg----------atacgaatcaacacagaggaaccac 333
Query: 125 aacaaagctgaaacacaggattaacgtagagaacctacttggaagtgtattttatctctt 184
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 334 aacaaagctgaaacacaggattaacgtatagaacctacttggaagtgtatttgatctctt 393
Query: 185 cattttatcatttccaaggaaaaagaagatcaacagcaaaggaacaaaaagttccacgag 244
|||||| |||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 394 catttt---------aaggaagaagaagatcaacagcaaaggaacaaaaagttccaccag 444
Query: 245 aaggtagaaaattattggctgacatgacctgatgataatgtcagcaactggagctctctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggtagaaaattattggctgacatgacctgatgataatgtcagcaactggagctctctg 504
Query: 305 tggacattggccttctggaagaaaagggctttttcttt-tcacgggagcaatactcggct 363
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 505 tggacattggccttctggaagaaaagggctttttctttgt-acgggagcaatactcggct 563
Query: 364 caactcttcatttaatattttagaagtcagtttcaaagtaggtcaaaaa-tgaaaaccaa 422
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 564 caactcttcatttaatattttagaagtcagcttcaaagtaggtcaaaaaatgaaaaccaa 623
Query: 423 ttctggtttcttcctcagctcacacctttaatttccatggaatagatactacgtgaatct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttctggtttcttcctcagctcacacctttaatttccatggaatagatactacgtgaatct 683
Query: 483 ctctattcccagcaagaggagaaggg 508
||||||||||||||||||||||||||
Sbjct: 684 ctctattcccagcaagaggagaaggg 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space: 447702
Effective search space used: 447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_h02.g1 MSMg01no155_h02.g1 CHROMAT_FILE:
MSMg01no155_h02.g1 PHD_FILE: MSMg01no155_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:21 2005
(497 letters)
>mm_chr3_110021077_110021973
Length = 897
Score = 857 bits (443), Expect = 0.0
Identities = 449/451 (99%)
Strand = Plus / Minus
Query: 1 ttaggataaggattggtatttggccctcatgtgacaaaggcagcctagaatctggtaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttaggataaggattggtatttggccctcatgtgacaaaggcagcctagaatctggtaaaa 392
Query: 61 ggatttctggtgtgttgactgtggatctgttgatcttgtccattcaaaggcacttcattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggatttctggtgtgttgactgtggatctgttgatcttgtccattcaaaggcacttcattt 332
Query: 121 atgctaaaccgagagctcagggggcaatttcaagacttctgttcaatacagcaatgagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 331 atgctaaaccgagagctcagggggcaatttcaagacttctgttcaatacagcagtgagaa 272
Query: 181 aacaagtgtttttaaagctgtggcatcactcttaatttgtggcatcagcaaaagaaaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aacaagtgtttttaaagctgtggcatcactcttaatttgtggcatcagcaaaagaaaagt 212
Query: 241 agtatacacagtgtcttggctatggttttactgctgtgacgagaagccatgaccacagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 agtatacacagtgtcttggctatggttttactgctgtgacgagaagccatgaccacagct 152
Query: 301 attcttatataggaaaacatttcattggggctggcttacagtttcagaggtctagtccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 attcttatataggaaaacatttcattggggctggcttacagtttcagaggtctagtccat 92
Query: 361 tggcatcatggtgaccagcacagcagcatgcaggtggagatggtggtggacaaggagctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tggcatcatggtgaccagcacagcagcatgcaggtggagatggtggtggacaaggagctg 32
Query: 421 agagttctataccttgatctacagggagcag 451
||||||||||||||||||| |||||||||||
Sbjct: 31 agagttctataccttgatccacagggagcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
