BAC Information

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BAC

Clone NameMSMg01-155H03
Chromosome3 (Build37)
Map Location 77,707,653 - 77,708,039
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155H03.T7 (MSMg01no155_h03.b1)MSMg01-155H03.TJ (MSMg01no155_h03.g1)
ACCAG356451AG356452
length742757
length of high quality
(start - end)
388 (162 - 549)317 (78 - 394)
definitionCHROMAT_FILE: MSMg01no155_h03.b1 PHD_FILE: MSMg01no155_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:21 2005CHROMAT_FILE: MSMg01no155_h03.g1 PHD_FILE: MSMg01no155_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATGTGATTTCCTTAATGTTTACTATAAAATAGGGTCTTCATT
CATAAGCTGAGAACAGTGAACCAGGGATATAGGTAATACAGAGGTATATT
GGCGAAGAACTGATAAGATAATGAATAGGGCTATAAAAACATGAGAAAGC
AAGGATTGGAGAAATAGAAATCATTGCCATGTATATAATGTTGACATTAA
TCTCATTAATCTGAAATGAGACTTATCTCAGGGATTAGATAATAGTAGCT
ATTGGGTTAATAACGGGGATTAGCGTTTACAGACAGCCCTTTCCAAAAAG
TCTGCCTCTAACCAGCTGACCAAAGCAGACTTCACATGTCTAGGTATTAT
TGCAGAATGATTTCTGGAGGAAGATGTGGTGAGGTACAGTCCTACTGCAG
CCTATGGAGCCATTATTACCATTTGCATACAATGGAGTTGATGCATGATG
GTGTCATAAAACCACATCATTCTATCTAGCGCTCTGTATATTGTGCAGCT
TTACACACGTACTCAAATTCTTAAAATCTAAATCCATGTAGAAATTATTC
TTACATCATTTGTGTTTTAAATATATTTATGTCAGACAATGTTCTTGTGT
CAATAATGTTTTCCAAGGTTTTGCTTTATTCATGATACTTACAATTGTGT
GATGATAATATTCCAAGTGCTTATTAATTCTTTACAAATATN
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCACTGTACCCCATT
TTTATTAGGGCAATTTGTTTCTATGGAGTCTAACTTCTTGAGTTCTTTGT
ATATGATAGAGCGGTCTCCTGGAAGGCTCTGCCAGTGCCTGACATATATA
GAAGTAGATGCTCACAGCCATTCATTGGACTTAACACAGGATCCTCAATG
AAGGAGCTAGAGGAGCTAGAGAAAGAACCTAAGGAGTTGAAGGGATTTGC
AGCCCGTGGAAGAACAACAATATGAACCAACCAGTACCCCCAGGGCTACC
ATGGACTAAACCACCAACCAACAAGTACACATGGTGAGACTCATGGCTCC
AGCTGCATATGTAGCAGAGGATGGCCTAGTCAGACATCAGTGGAAGGAGA
GTCTCTTGGTCCTATGAAGGCTCTATGCCCCAGGGTAGGGGAATGCTAAG
GCCAGGAATTGGGAGTGGGTGTGTTGGTGACCACGCGGAGCTCCTACCTC
CCCCCTCCCCCCCTCCTTCCCCCCCCCCCCTTCTCCCCTCCCCCCCCCTC
CCCCCCCCCTCTCATTACCCCCCTTCTTACCCGCCCCTGTCCGCCCCCCC
GCCCCCTCCTCCCCCTTTCTTCCCCCCTTCCTCCTCCACTCCATCACAGT
CGCCTCTCTTCACTCTTCCTCTCTCCCCCGTGCTCCCCCTTCCTCCCCCC
CACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_h03.b1 MSMg01no155_h03.b1 CHROMAT_FILE:
MSMg01no155_h03.b1 PHD_FILE: MSMg01no155_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:21 2005
         (388 letters)



>mm_chr3_77707453_77708240
          Length = 788

 Score =  741 bits (383), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataagataatgaatagggctataaaaacatgagaaagcaaggattggagaaatagaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gataagataatgaatagggctataaaaacatgagaaagcaaggattggagaaatagaaat 528

                                                                       
Query: 61  cattgccatgtatataatgttgacattaatctcattaatctgaaatgagacttatctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cattgccatgtatataatgttgacattaatctcattaatctgaaatgagacttatctcag 468

                                                                       
Query: 121 ggattagataatagtagctattgggttaataacggggattagcgtttacagacagccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggattagataatagtagctattgggttaataacggggattagcgtttacagacagccctt 408

                                                                       
Query: 181 tccaaaaagtctgcctctaaccagctgaccaaagcagacttcacatgtctaggtattatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tccaaaaagtctgcctctaaccagctgaccaaagcagacttcacatgtctaggtattatt 348

                                                                       
Query: 241 gcagaatgatttctggaggaagatgtggtgaggtacagtcctactgcagcctatggagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcagaatgatttctggaggaagatgtggtgaggtacagtcctactgcagcctatggagcc 288

                                                                       
Query: 301 attattaccatttgcatacaatggagttgatgcatgatggtgtcataaaaccacatcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 attattaccatttgcatacaatggagttgatgcatgatggtgtcataaaaccacatcatt 228

                                      
Query: 361 ctatctagcgctctgtatattgtgcag 387
           |||||||| ||||||||||||||||||
Sbjct: 227 ctatctagtgctctgtatattgtgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)