XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAGAATGAGAGCACATCTTGAAAATAATGATGGAGTACAGTCTGACTCC
AGCCTTAATCTGTCAACCCTAAAAAAAAAAAAAAAAAAAAAAAAATCCTG
TGCAGACTTAGCCATACAATGGGGAGAATCGCAACATCTTTTCTCACAGT
AACGTTTTTATGTGTTGACAAATTCTTCAAACACTTGGAAAACTGAAGTA
AGGGAAATCCTACGAAGTTCTCTGAATATCTTTCTGCTAAGTTTCTCAGC
ACCGTCTAGTTAGTGTTCTAAGTCTTACACAGCCCCCTTACCACTGTCTA
AAAATAGATGTGACCTACCAAAGTCTGGCTATGGTGTGCTGTAGGCAAGT
TTCAGTGCTGCGTTTGTCAGCAAACCTAGATGATTTTAAAATTGATTTAT
AGGTTCTGGAAATAACTACTTTGATTCGGTTTTACTTTAGAAGAAATATC
TCTGTCAGAAGGATACACTATCCCATACTCCCTTTCTTGTCAGCTTTATG
TCCCTAGCAACCACCTGGTATTTAATGCCAAATTGGGAGCATCCAGTGTG
TTCTGAGTTCTCTCCATATCTAAAAAGGTGGTTACGAGAAGGGGCTATAT
TTGAAATCATATCTGGACGCTACTTTTTGTTTTGCACTGACTCTTTAAAA
TCATGCCCTCCCCCCTTTATCTGCAAAATAGAAAATTAAACCCTCCCAGA
ATTGG

TATATAATCGCGAGAAACGTAAAGAGAATCATCACCCATATGAAATTTAT
AACAAAAGAATACTCAAGATGCCGTCGCAACGCCCGGGTTACCTTTATCG
TGGAGCGCGATAGATTGTAGCCACCCGACAAAAATTTGCTTTTGATAAAA
GCGATGGACCTAACCCTGAAGCGTGAAGAAGGATTACGCGTACGACATAA
AATTTATTGGTAGAAACCTTACAACATTTTGCGAGCGTGATCGCCCTTTC
ACGTTCAACCTCCTTTCCTTTCCTTCCTAAAGGAGAGGAGGGGGGGGGGA
GTTAATCAAATTGGCGAGTGCAACGTTTTTTGTCTCCGCTATAATAATCC
GTACGCTGCGTAGAGCTTGGGCCGGGGTACCGACGCTTCGACACATTCCC
GTGCGTTACTTCGGGCAAAGGAGAAGAGGTGTAGGAGGGTGTATCCATAT
CGACAAAAAACAGATAATGGGCTAATGACTTATATAGGTAAACGGAAAAA
ATTTATCCGCTAATTTACATCGCGTACGGTGCGAAACAGCACGTAACATC
GTTTCATCCCCTACATCCCTTTATCCTCAACTTCGTTATATGCAGGGGGG
GGGGTAGGGGATATAAACCAACGTTGTACCACAGCGGCGATTAGCAAAAA
CGGCAAATACCTACAATTTTACCGTCATTTTACCGTTCTACCGCGATTTA
ACGAGTGGGGGCCCGCCCGCCCTCCCATTNTTTGTATTTTGGCTATTCTT
TCCCAAAAAAATTCTTATTTCCAATTGTCCCGTTTGGCCCCGGTCTTTTA
ACCTTTTCCCTTATGTCCACTGATTTCCCCCCCCTTCCTCCATTTATTTT
GTTTTAAATNGGGTGGGATAATACCC

Query= MSMg01no155_k21.b1 MSMg01no155_k21.b1 CHROMAT_FILE:
MSMg01no155_k21.b1 PHD_FILE: MSMg01no155_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:38 2005
         (569 letters)



>mm_chr3_126487402_126488370
          Length = 969

 Score =  994 bits (514), Expect = 0.0
 Identities = 549/566 (96%), Gaps = 9/566 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaagaatgagagcacatcttgaaaataatgatggagtacagtctgactccagc 63
           ||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct: 213 ggaattccaagaatgagagtaaatcttgaaaataatgatggagtagagtctgactccagc 272

                                                                       
Query: 64  cttaatctgtcaaccctaaaaaaaaaaaaaaaaaaaaaaaaatcctgtgcagacttagcc 123
           |||||||||||||||||         |||||||||||||| |||||||||||||||||||
Sbjct: 273 cttaatctgtcaaccct---------aaaaaaaaaaaaaatatcctgtgcagacttagcc 323

                                                                       
Query: 124 atacaatggggagaatcgcaacatcttttctcacagtaacgtttttatgtgttgacaaat 183
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 324 atacaatggggagaatcgcaacatcttttctcacagtaacatttttatgtgttgacaatt 383

                                                                       
Query: 184 tcttcaaacacttggaaaactgaagtaagggaaatcctacgaagttctctgaatatcttt 243
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttcaaacagttggaaaactgaagtaagggaaatcctacgaagttctctgaatatcttt 443

                                                                       
Query: 244 ctgctaagtttctcagcaccgtctagttagtgttctaagtcttacacagcccccttacca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgctaagtttctcagcaccgtctagttagtgttctaagtcttacacagcccccttacca 503

                                                                       
Query: 304 ctgtctaaaaatagatgtgacctaccaaagtctggctatggtgtgctgtaggcaagtttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgtctaaaaatagatgtgacctaccaaagtctggctatggtgtgctgtaggcaagtttc 563

                                                                       
Query: 364 agtgctgcgtttgtcagcaaacctagatgattttaaaattgatttataggttctggaaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtgctgcgtttgtcagcaaacctagatgattttaaaattgatttataggttctggaaat 623

                                                                       
Query: 424 aactactttgattcggttttactttagaagaaatatctctgtcagaaggatacactatcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aactactttgattcggttttactttagaagaaatatctctgtcagaaggatacactatcc 683

                                                                       
Query: 484 catactccctttcttgtcagctttatgtccctagcaaccacctggtatttaatgccaaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 684 catactccctttcttgtcagctttatgtccctagcaaccacctggtatttaatgccaaac 743

                                     
Query: 544 tgggagcatccagtgtgttctgagtt 569
           ||||||||||||||||||||||||||
Sbjct: 744 tgggagcatccagtgtgttctgagtt 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)