BAC Information

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BAC

Clone NameMSMg01-155K23
Chromosome3 (Build37)
Map Location 126,487,722 - 126,487,915
singlet/doubletsinglet
Overlap geneCamk2d
Upstream geneUgt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155K23.T7 (MSMg01no155_k23.b1)MSMg01-155K23.TJ (MSMg01no155_k23.g1)
ACCAG356628AG356629
length749745
length of high quality
(start - end)
195 (164 - 358)576 (72 - 647)
definitionCHROMAT_FILE: MSMg01no155_k23.b1 PHD_FILE: MSMg01no155_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:38 2005CHROMAT_FILE: MSMg01no155_k23.g1 PHD_FILE: MSMg01no155_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAGAATGATAGCCAATCTTGAAAATAATGATGGAGTACAGTCTGAC
TCCAGCCTTAATCTGTCAACCCTAAGAAAAAAAAAAAAAAAAAAAAAATC
CTGTGCAGACTTAGCCATACAATGGGGAGAATCGCAACATCTTTTCTCAC
AGAAACGTTTTTATGAGATGACAAATTCTTCAAACACTTGGAAAACTGAA
GTAAGGGAAATCCTAAGAAGTTCGCTGAATATCTTTCAGCTAAGTTTCTC
AGCACCGTCTAGTTAGTGTTCTAAGTCTTACACAGCCCCCTTACCACTGT
CTAAAAAGAGATGTGACCTACCAAAGTCTGGTTATGGTGTGCTGTAGGCA
AGTTTCAGTGCTGCGGTCGCCACCAAACCTAGATGATTTTAAAATTGATT
AATAGGTTCTGGAAATAACTACTTTGATTCGGTTTTACTTTAGAAGAAAT
ATCTCTGACAGAAGGATACACTATCCCATACTCCCTTTCTTGGCAGATTT
ATGTCCCTAGCAACCACCTGGGATTTAATGCCAAATTGGGAGCATCCAGT
GTGTTCTGAGTTCTCTCCATATCTAAAAAGGCGGCCACGAGAAGGTGCTA
TATTTGTAATCATATCTGGATGTTACTTTTTGCGTTGCACTGAATCATAA
TATCCATGTTCCTCCCCCCTTAACTGCAGAAAAAAAATACTAACCCCTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTAAGGAATACTGAATGCCTGAGAA
GCACCTGAAAAAATTTTCAGCATCCTTAATCAGCAGAAAAATGCAAATCA
AAGCATCCCTGAGATTCCAACTCATATCAGTCAGAATGCCTCAGAACAAA
AACTCAGGTGACAGAAGATTCTGTCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGTTTGTACAACCACTCTGGAAATCAG
TCTGGTGTTTCCTCAGAAAATTGTACTACATAGTACTGGAGTATCTAGCA
ATACCTCACCTAGGTATATATCCAGAAGATGTTCCAACTGGTAAGAAGGA
CACATCCTCCACTATGTCCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAATAACCCAGATGTCCCTCTACAGAGGAATGGATACAGAAAATGTGG
TACATTTACAAAATGGAGCACTACTCAGCTATTAAAAAGAACGAATTTAT
GAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACCCAATCACAAAAGAACTCACATGATATGTACTCACTGATACGTGGA
TAGTAGCCCAGGAACTTAGAATACCCAAGATTTAAGATACCCCTGGAAAA
CATGAAACTCAATAAGAATGAAGACCCAAGTGTGGACACTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_k23.b1 MSMg01no155_k23.b1 CHROMAT_FILE:
MSMg01no155_k23.b1 PHD_FILE: MSMg01no155_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:38 2005
         (195 letters)



>mm_chr3_126487522_126488116
          Length = 595

 Score =  306 bits (158), Expect = 7e-88
 Identities = 185/194 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccatacaatggggagaatcgcaacatcttttctcacagaaacgtttttatgagatgaca 60
           ||||||||||||||||||||||||||||||||||||||| ||| |||||||| | |||||
Sbjct: 201 gccatacaatggggagaatcgcaacatcttttctcacagtaacatttttatgtgttgaca 260

                                                                       
Query: 61  aattcttcaaacacttggaaaactgaagtaagggaaatcctaagaagttcgctgaatatc 120
           | ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 261 atttcttcaaacagttggaaaactgaagtaagggaaatcctacgaagttctctgaatatc 320

                                                                       
Query: 121 tttcagctaagtttctcagcaccgtctagttagtgttctaagtcttacacagccccctta 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctgctaagtttctcagcaccgtctagttagtgttctaagtcttacacagccccctta 380

                         
Query: 181 ccactgtctaaaaa 194
           ||||||||||||||
Sbjct: 381 ccactgtctaaaaa 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)