Query= MSMg01no155_n10.b1 MSMg01no155_n10.b1 CHROMAT_FILE:
MSMg01no155_n10.b1 PHD_FILE: MSMg01no155_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:50 2005
(487 letters)
>mm_chr3_146279918_146280804
Length = 887
Score = 895 bits (463), Expect = 0.0
Identities = 478/483 (98%)
Strand = Plus / Plus
Query: 5 gaattcaggtttccatgtgcactggatgcaaaagtgtgtgtacacagggctctgcatgtg 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggttcccatgtgcactggatgcaaaagtgtgtgtacacagggctctgcatgtg 264
Query: 65 aaaccatttctactcggcccctcttttgagagtacaggcgtacattctctttgtggcaaa 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 aaaccatttctactcggcccctcttttgagagtacaggcgttcattctctttgtggcaaa 324
Query: 125 gtctaattcctaatttgcttattatctaagtgctaaactggaaggaattgatatgatttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctaattcctaatttgcttattatctaagtgctaaactggaaggaattgatatgatttt 384
Query: 185 gtgatatcatcatcttcataagcaatggagattggagagatgactcagtgggccagagct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgatatcatcatcttcataagcaatggagattggagagatgactcagtgggccagagct 444
Query: 245 ccagccgtgaaggcactgaggacttgggttcggacccattgcatggatgcttgtgcacga 304
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 ccagccgtgaagacactgaggacttgggtttggacccattgcatggatgcttgtgcacga 504
Query: 305 aacctcaatactttgaggaaaagacattttgatcccaagagctttctggtctaccagtct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacctcaatactttgaggaaaagacattttgatcccaagagctttctggtctaccagtct 564
Query: 365 agtaagaacagtgagcccccagaaagacattgtctcaagacaataaggaggagaatatta 424
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 agtaagaacagtgagcccccagaaaggcattgtctcaagacaataaggaggagaatatta 624
Query: 425 gaagacacttggcatcctgtgttggccactgcacacatgcacggaggtgcacacactcat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaagacacttggcatcctgtgttggccactgcacacatgcacggaggtgcacacactcat 684
Query: 485 aca 487
|||
Sbjct: 685 aca 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_n10.g1 MSMg01no155_n10.g1 CHROMAT_FILE:
MSMg01no155_n10.g1 PHD_FILE: MSMg01no155_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:50 2005
(401 letters)
>mm_chr3_146407260_146408063
Length = 804
Score = 739 bits (382), Expect = 0.0
Identities = 398/404 (98%), Gaps = 3/404 (0%)
Strand = Plus / Minus
Query: 1 acagaattgagttcaacagaattgagtatgtttaatgggattataattggtgctgatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 acagaattgagttcaacagaattgagtatgtttaatgggattataattggtgctgatttt 545
Query: 61 tagcaagtaggaaataatgacccttgatcatttgtggactgagcatgtaacactctccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tagcaagtaggaaataatgacccttgatcatttgtggactgagcatgtaacactctccaa 485
Query: 121 aattactccataaacttttcttttgcacttttagtctctaatttttcttccaaaagtatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aattactccataaacttttcttttgcacttttagtctctaatttttcttccaaaagtatt 425
Query: 181 tgcttaaagtcattacttctcaccttagctcatgcttgagacttttctggaattactcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgcttaaagtcattacttctcaccttagctcatgcttgagacttttctggaattactcct 365
Query: 241 tccgttttcagtagagaaggaaagcaagcattggaagctttgggagttgagagatagctc 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 364 tccgttttcagtagagaaggaacgcaagcattggaagctttgggagttgagagatagctc 305
Query: 301 tgcaggaaagggccctgagttcacagacagaagaaggcactcatgtgtcctccccccaca 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 304 tgcaggaaagggccctgagttcacagacagaagaaggcactcatgtgccctccccccaca 245
Query: 361 gaaagaaggccatg-aatc--cttctggattcacaggaggaggc 401
|||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 244 gaaagaaggccatgtaattaacttctggattcacaggaggaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 804
Length adjustment: 9
Effective length of query: 392
Effective length of database: 795
Effective search space: 311640
Effective search space used: 311640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
