BAC Information

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BAC

Clone NameMSMg01-155O18
Chromosome3 (Build37)
Map Location 107,026,635 - 107,026,950
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131
Downstream geneA630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155O18.T7 (MSMg01no155_o18.b1)MSMg01-155O18.TJ (MSMg01no155_o18.g1)
ACCAG356800AG356801
length787806
length of high quality
(start - end)
321 (42 - 362)248 (73 - 320)
definitionCHROMAT_FILE: MSMg01no155_o18.b1 PHD_FILE: MSMg01no155_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:56 2005CHROMAT_FILE: MSMg01no155_o18.g1 PHD_FILE: MSMg01no155_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGATTGCATGCGTTTTGTTGAGATTTTTGTTTCTATGGTATTAAGGATA
TTAGCACTTGATACCTTTATCTTTGAATCTCATGTGACCCTATCAGTGAT
CCTGTCTATCTTCAGAAGAAGAAAGTGAGGCATGGAGAGGTAAGGATATT
TACTCAAAGCCATATCACATGTAGCTGACCCTGGATTCAAGGCACATGGC
CACACATGTTTTTTCCAGAAGCCACAATTTCCCTCCCAGTCACCTTGCAA
TTTGGGGAGGGGAGTTCTTTTTTTTTTCCTCAACTAGACCAACGCATGCT
CACTTGAGTGTGGACTCCATGCGCCCTGAGATGACAGCAGTTTCGTCTGA
TTTTTTTCATTTCCCACTTTTTTTTTTTACCCTTCTTTCCTTTATCTTCA
CTTCCCCCTCCTCCTCGCTTTTTTTTTTTTTCCCTCTTTCCCCCCTTCCC
CCTTCCCCGTTTCTCTTTTCCCCCTTTCCCCTTTTCCTTTTCCCCTCCTC
TTTTCCCTTCCCCCTTTTTTTCCTTCCTCCCCCCCCCTCCCCTCTTTTTT
ATCTCCCCCTTTCATATTCCCTACCTTCCCTTTACCCCGCTTTTCCTTTA
CCCCCTTTTTTTCCCCCTTTATCCCCGCCCATTTCCCTCCCCCCTATCCT
TTTTTTCCTTTTCCCCCCTTCCTTTCTCCCCCCTTTTTTTTTTCCCCTTA
CCCATCCCCCTCTCTCCCCCCTATTTACCCCCCCCTN
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGGATAAATTTCTAAAAACAAAACAA
AACAGGATTGTCTTAGGATTTCATTGCTGTGAAGAGACACCATAGCCAAG
GTAACTCTTATAAAGGACAACATTTTAATTGAGGATGGCTTACACTTTAA
GAAGTCCAGTCCATTATCATCAAGGTAGGAAGCACAGCAGCATGCAGACA
GACATGGTGCTGGAATTGCCAGAGTTCTACATCTTGATCCAAAGGAAGCC
AGGTGGAAACTGTTCTCCACAGTCTTCTCCACTGAAGGAGGGTCTCTTCT
GCCCTGTCCCTAGTTTACTCTCTACGAGCCCTCTGACGTTGCCTACCGCC
CGATATGTTTGTTCCCCCCTCCCTTATCCCTCTCCCCTTTCTTCCTCCCC
TTTGCCCCCCTGTATCCCTCCCCCCCCCCCCGTTTTTTTTACCTTCCCCT
TTTTTTACCCCCCCTTCCCCTATTTTTTTCCCCCCCCCCCTTTTCCCCCT
TCTTTCTTTTCCCTTTTTACTCCCCTTTTCTTCCCCCCCCTCTTTTCACT
TCCCCCCCTCCCCCTCCTTAAATTTTTTTCCACTTTCCCTTTTTTTTTTT
TATCCCCCCTTTTCCCTTTCTTTTACCCCCTCCCTCTTTTTCCCCCTTTA
TTTCCCCCTTCCTTATTTCCCCCCCCCCCCTCTTTTTCCCCTTCCCCCGC
CGCCCACCCTCACCCCTATTCCCCCCTATCCCTTTATCCCTTTTTTTTCC
CCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_o18.b1 MSMg01no155_o18.b1 CHROMAT_FILE:
MSMg01no155_o18.b1 PHD_FILE: MSMg01no155_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:56 2005
         (321 letters)



>mm_chr3_107026236_107026955
          Length = 720

 Score =  497 bits (257), Expect = e-145
 Identities = 302/317 (95%), Gaps = 1/317 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagattgcatgcgttttgttgagatttttgtttctatggtattaaggatattagc 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaattcagattgcaagtgttttgttgagatttttgtttctatggtattaaggatattagc 656

                                                                       
Query: 65  acttgatacctttatctttgaatctcatgtgaccctatcagtgatcctgtctatcttcag 124
           ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 655 acttgatacatgtatctttgaatctcatgtggccctatcagtgatcctgtctatcttcag 596

                                                                       
Query: 125 aagaagaaagtgaggcatggagaggtaaggatatttactcaaagccatatcacatgtagc 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 595 aagaagaaagtgaggcatggagaggtaaggacatttactcaaagccatatcacatgtggc 536

                                                                       
Query: 185 tgaccctggattcaaggcacatggccacacatgttttttccagaagccacaatttccctc 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 535 tgaccctggattcaaggcacatggccacacatg-tttttccagaagccacaatttccctc 477

                                                                       
Query: 245 ccagtcaccttgcaatttggggaggggagttcttttttttttcctcaactagaccaacgc 304
           |||||||||||||||||||||||||||||||| |||   ||||||||| |||||||||  
Sbjct: 476 ccagtcaccttgcaatttggggaggggagttcctttgaatttcctcaattagaccaacat 417

                            
Query: 305 atgctcacttgagtgtg 321
           |||||||||||||||||
Sbjct: 416 atgctcacttgagtgtg 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)