BAC Information

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BAC

Clone NameMSMg01-156F18
Chromosome3 (Build37)
Map Location 129,838,346 - 129,838,632
singlet/doubletsinglet
Overlap genenone
Upstream genePitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844
Downstream geneEG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156F18.T7 (MSMg01no156_f18.b1)MSMg01-156F18.TJ (MSMg01no156_f18.g1)
ACCAG357121AG357122
length713717
length of high quality
(start - end)
314 (46 - 359)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no156_f18.b1 PHD_FILE: MSMg01no156_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:28 2005CHROMAT_FILE: MSMg01no156_f18.g1 PHD_FILE: MSMg01no156_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTA
CAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTATC
AGAAGTAAAGTGGGAAATAGCTTTACAAGGTACGTCTGGCCTTGAACTTT
CTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTA
CAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGGAGCCTTTTTGTT
CCTTTTCACATGTTATCAAGCGGTTAAGGCAGGGCTGAAAATTCTGGATG
AAATTCAGGTTTTTCTATCACCACCCCCCGCGCGGAGAGAGAGTAGGAGC
AAAGAGGAAATATGGTGCACACCACAAATATACAGGCCTTTCCAAGGGTC
TTAAACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATT
AGAAGGAAGGAAAAGAAAAAAGATCAATCAGCGGAGGTTTCTAGGAGAAG
GAGCCTATACTCATCACTAGATGAGCTCAAGGAGCCAGTTCTTATTAGTT
CTGAATCAGATGAAAAGACTATTAGGGCCTGCAAGGTGCTCTCCCGAGCA
GGTGAAGCCACAGGACCACTAACAAAGATCGTCCAGGGACCTCAGGAGTC
ATTCTAAGATTTT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCAACCTAGTCAACACAGTG
AATATCAGACCAGCCAGAGCCAGATAGCAAGACTTTGTCTCAAAAGAAAA
GAAAAGTTTTTAAAAATATAAATTAATTAAATATGTACAAAGTACATACT
AAGTGTTTAGAATTTTAGACCCTGTCACGACGTGTCCACAGTGACTCCAT
GTTCCTTGTTTGTCACTTGAGATCCCGCTAACATCCAAAATTCAATAAGT
TTTCTTACCAGACATTATCCATTCTCTCACTCAACAAATATTTATCATGT
TCCTGTTCAGAGACTGTGTTAGGACCCGCCCCGCTAAATAAGAAGGAAAT
CGAATTCTAGAAACAACACACCACCCCCATGAATCACTGAGAAGGTGATA
GTTAAGCTAGGTTTTGAAACAAGGGAGTTAACAGTGGGTACCTCAAAAGA
ATGTCCTATCCATGAGCAGATGCTAGAACTGGCCTGGCATGGTCTAGTCT
GGGAATAGAGAGAGATGGTTGTAGCCAGAGCAGGGTGGGGTGGAGGAGAG
AGATCCTGTAGACCCGGCTCCCCCGCCCATATCTATTTTTTCATTTTTGC
CCCCCACCCCCTTTCCTCCTTTTCCTTTTTCCCACTTCTTTTTCCCCGCT
TTTTTTTCCAAATATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_f18.g1 MSMg01no156_f18.g1 CHROMAT_FILE:
MSMg01no156_f18.g1 PHD_FILE: MSMg01no156_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:28 2005
         (287 letters)



>mm_chr3_129838035_129838721
          Length = 687

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaccaacctagtcaacacagtgaatatcagaccagccagagccagatagcaagacttt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 598 aagaccaacctagtcaacacagtgaataccagaccagccagagccagatagcaagacttt 539

                                                                       
Query: 61  gtctcaaaagaaaagaaaagtttttaaaaatataaattaattaaatatgtacaaagtaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 538 gtctcaaaagaaaagaaaagtttttaaaaatataaattaattaaatatgttcaaagtaca 479

                                                                       
Query: 121 tactaagtgtttagaattttagaccctgtcacgacgtgtccacagtgactccatgttcct 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tagtaagtgtttagaattttagaccctgtcacgacgtgtccacagtgactccatgttcct 419

                                                                       
Query: 181 tgtttgtcacttgagatcccgctaacatccaaaattcaataagttttcttaccagacatt 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 418 tgtttgtcacttgagatcccgctaacatccaaaattcaataagctttcttaccagacatt 359

                                                          
Query: 241 atccattctctcactcaacaaatatttatcatgttcctgttcagaga 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atccattctctcactcaacaaatatttatcatgttcctgttcagaga 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)