BAC Information

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BAC

Clone NameMSMg01-156H02
Chromosome3 (Build37)
Map Location 97,580,267 - 97,580,577
singlet/doubletsinglet
Overlap genePde4dip
Upstream geneZfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2
Downstream geneSec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156H02.T7 (MSMg01no156_h02.b1)MSMg01-156H02.TJ (MSMg01no156_h02.g1)
ACCAG357184AG357185
length745723
length of high quality
(start - end)
315 (46 - 360)37 (76 - 112)
definitionCHROMAT_FILE: MSMg01no156_h02.b1 PHD_FILE: MSMg01no156_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:34 2005CHROMAT_FILE: MSMg01no156_h02.g1 PHD_FILE: MSMg01no156_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGCTTTGTATTTTCCCCATATTTTCTTTAATAACAGCTAAACAA
ACTGTAGGCACAGGATTTCCTTGTGGGCACAGAGCAACAGAATTGGGGAG
GGATGCTCACTAATCAAACAGGACCTTCCCACTCAGAGCCGAAGATACTC
AAGCTTTTACATTCATGTCTCTTTTGCACTAATGTAAACAGCACTGCTTA
CAGTCAGACATATTTCCTAAAATAGTAAACATTCCAGGGTTTCCATGGAG
AGATCTGACGTGGAGGCTAATGCAAGAATGTGTTCTGAATGCTCACGGAG
AAGGAAACCCTTATTGGGATCCCGCCCCCCACGCAACACCAGACAACTTC
ATATAAGGAGGTTTGCGCCCCCCATCTAACAATCTTTCTTTCTTTCTGTC
TTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCGTTCT
TGCTTTCTTTCTTGCTTTCTTTCCTTCTTTCTCCCTTTCTTTCTTTCTCC
CTTTCCTCCTTACTCTCCTTCTTCCTTCGCTTCCCCCCTTCTTCCCCTCT
CCCTCTTTCCTCCCTCTTCCCCTCCCTCCTCCCGTTTCCTGCCCCCCCCT
CTTCGCTCCCTTCATTAATCTCTCTCGTACCGCCGTCCGCATCCCTTGTT
TTAACCCTCCTTCTCTCTCGTCTGTGAATTTAATCGCGTCGTTTN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTACCTGGGGGGAAGGGGGAAGGTT
TAATCAATAACTCTAGCTATCTGCCTCAAAGAGAACACTTTGAACTCCCT
TTTTTTTCAAAAATTTTTTATTATTTAAAGGCATCTTATACTTCAAACAT
ATTAATAATATTGAATATTTGGAGAATCAAATAATACATAAAGTATTTGT
TCAACTTTTATATTCATATCCTTTCATACCCTAAAATATCATTAAGGAAT
ATTTAATGCTACCCATAACTGAGGATATCATACCCAATGTTGAAAAGCAA
ATTGTTTTATTTTTTTCCCCCCCCCCCCCGCGAGTTAAGCTTAGTAAAAG
AACTTAAATTCTTCCCCCCCAATAAAAAAGCCATATATTCAAAAGCCCTT
ATATTATACAACCGGACACAGTGCGAGAGTCTTTAACACGCATTATATAT
CGGTATATATTGTCTACCAATCCGTTTACTTTATAAAGATTATCACTGTT
CCTAGGAGAAAAGTTACTTCATCCCCCATTATATCTTTAAAATTTCAAAA
AATCTAAACTCCTTCCGCATCATCCCACCCGAATATGCTTTTTTCCGTTT
TCGCCCCCCACTCCCTTTCATCATTTTCATATTTTCGCCTTACGTTGCCC
CCTAATATTTTCCCCATTTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_h02.b1 MSMg01no156_h02.b1 CHROMAT_FILE:
MSMg01no156_h02.b1 PHD_FILE: MSMg01no156_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:34 2005
         (315 letters)



>mm_chr3_97580063_97580777
          Length = 715

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgctttgtattttccccatattttctttaataacagctaaacaaactgtaggc 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcttactttgtattttccccatattttctttaataacagctaaacaaactgtaggc 456

                                                                       
Query: 65  acaggatttccttgtgggcacagagcaacagaattggggagggatgctcactaatcaaac 124
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 455 acaggatttccttgtgggcacagagcaacagaactggggagggatgctaactaatcaaac 396

                                                                       
Query: 125 aggaccttcccactcagagccgaagatactcaagcttttacattcatgtctcttttgcac 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aggaccttcccactcagatccgaagatactcaagcttttacattcatgtctcttttgcac 336

                                                                       
Query: 185 taatgtaaacagcactgcttacagtcagacatatttcctaaaatagtaaacattccaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taatgtaaacagcactgcttacagtcagacatatttcctaaaatagtaaacattccaggg 276

                                                                       
Query: 245 tttccatggagagatctgacgtggaggctaatgcaagaatgtgttctgaatgctcacgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tttccatggagagatctgacgtggaggctaatgcaagaatgtgttctgaatgctcacgga 216

                      
Query: 305 gaaggaaaccc 315
           |||||||||||
Sbjct: 215 gaaggaaaccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)