BAC Information

Click to search

BAC

Clone NameMSMg01-156I20
Chromosome3 (Build37)
Map Location 60,064,887 - 60,065,199
singlet/doubletsinglet
Overlap genenone
Upstream geneP2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
Downstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156I20.T7 (MSMg01no156_i20.b1)MSMg01-156I20.TJ (MSMg01no156_i20.g1)
ACCAG357262AG357263
length724807
length of high quality
(start - end)
320 (23 - 342)---
definitionCHROMAT_FILE: MSMg01no156_i20.b1 PHD_FILE: MSMg01no156_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:43 2005CHROMAT_FILE: MSMg01no156_i20.g1 PHD_FILE: MSMg01no156_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTTTTATGTTTGATGC
CAAATTTTTTACATTTTATTTCAATAATAAATAGTTTTTAAAAAGATAAT
TAATCTTGCTATGTTAAATCACTCTTCACTCCTGAAATTAAGAAGTTTTT
TATACTGAATGGTAGAATGAAGGGTTAGAGAGCTTTCCAAGAGGCTAAAA
AGTAATAATTCTATTCGAGAAGACCTAAGCTTCGTTTCCAGCACCCCCAT
CAGGAAGCTTACAAACAGTCTTCAATTTCATCTACAAGGACATCTGACTC
TTTTCTTCCACATGCCCACACATAGGCTTATACCCATAGTTAATTAAATC
CATAACAATACCTCTTATAATTACAAAAGAGAGTGATTTTAAAACTTATA
CAAACAAAAAAACAGTCATGACTGTTTACTCCTAAGTGGGACCAGTAATC
CTTGCTCAGTATTTTCCCTTTCACATTGGCAACCGTATTTACTTTGCAAT
CAATATTTTCTTATCTTCTATGGCATCATAATTCAAGTTAAAATGTGTTA
GGAAAATTGGAAGCCATACTAAATGCTATGTCACATCTTCTTGCCATGAG
ACTTTGACACGTCTCCCATTAATAGTACACTCAGTGTTTCCTTTCTTTGA
GCTTCAGTGGCTTTACAAGAATATAGGAACAATATTGTGCCTTCTTTTGG
CAATTTTTGGAAGGTTGTGCATTN
TTTTTTTTATTTTTTATTTNNANACCCTCACTTCGAAAAACNNNNNNAAA
CCATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGCAAAACCAATAAACCGGTAAA
AAACAAGGGCCGGAACCCTAATTTCCGGCCTGGCAAGGTAATGGCCGGCC
CGGATCCACTTCCTCCTCCAACAATAAACGGGAAAACCACCGGTTCCAGG
CTGAACCACAAGGGAAAGGCCTAACCCCCAAGAACAAACGGAAAAACCCC
GAAAACCTGAACCAAAAAAAAACCACCCCTAAATTTTTTAAGAATTTTAA
CCCCAAAATGGAAAAAATTACTTATTAAAAAACTAATAACCGGAAAGAAG
GGCCATCATTGTTTTTTTTTCCCCTCGCCCCCCCCTTTTCTAAGGCCTTA
AAAATTATTGGGAAAAAAAAATTGGAAAAAGATTAAACTTAGGGCTAAAA
GAGGCCCAAAAACCCTATAAGAAAAGCTAAAAAGGAAATTTAAGTTGGGG
GAAAAAAGCCAAAAGGAGAAGGAAAAGGCAAACAAGGGTCATCCCTAGGC
CCTTAGGCCCCCAATGGAAAACAAGGTTACGGCCTGGCGCCTTGGTTTGA
ATAATTACCCCTGTAGAATTAAATATGGAAAATTTCTCTTCTATAAAATC
CAAGGAACCCATTTTAATGTTTACAACCTTTCGACCCCCTTGGAACTTGA
ACTTTGAGTATAGGAAATAAAATAGGATCCATTTTTCCATTTTTTCAACA
AAACGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_i20.b1 MSMg01no156_i20.b1 CHROMAT_FILE:
MSMg01no156_i20.b1 PHD_FILE: MSMg01no156_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:43 2005
         (320 letters)



>mm_chr3_60064684_60065402
          Length = 719

 Score =  569 bits (294), Expect = e-166
 Identities = 309/316 (97%), Gaps = 5/316 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagttttatgtttgatgccaaattttttacattttatttcaataataaatagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagttttatgtttgatgccaaattttttacattttatttcaataataaatagt 263

                                                                       
Query: 64  ttttaaaaagataattaatcttgctatgttaaatcactcttcactcctgaaattaagaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttaaaaagataattaatcttgctatgttaaatcactcttcactcctgaaattaagaag 323

                                                                       
Query: 124 ttttttatactgaatggtagaatgaagggttagagagctttccaagaggctaaaaagtaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttttatactgaatggtagaatgaagggttagagagctttccaagaggctaaaaagtaa 383

                                                                       
Query: 184 taattctattcgagaagacctaagcttcgtttccagcacccccatcaggaagcttacaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taattctattcgagaagacctaagcttcgtttccagcacccccatcaggaagcttacaaa 443

                                                                       
Query: 244 cagtcttcaatttcatctacaaggacatctgactc--ttttcttccacatgcccacacat 301
           |||||||||||||||||||||||||||||||||||  |   |  ||||||||||||||||
Sbjct: 444 cagtcttcaatttcatctacaaggacatctgactcagt---caaccacatgcccacacat 500

                           
Query: 302 aggcttatacccatag 317
           ||||||||||||||||
Sbjct: 501 aggcttatacccatag 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space:   220810
Effective search space used:   220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)