XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
AGTAAAGAACATCTCATAAATGAGATCAAATGGTAAGAAAATAGTCGGTG
ATGAAGAGCTATTACAAAACGTGGGAAGCTTGTGACACCCAACGAGGCAG
CTGGCAACTCTCTAGAACATTGCTGTAAAGTCTCATTACCACAGCTTGAT
GGCAATTGTTCAGGCTCTAAACAGCTGTCTGGATTGCTGGAGCAGCTGTT
ACCTGGAAAGATCATTTGAAGAGATGAGTCTCCTGTAGACTATCTAATAA
CTCTCCTAAAGAGGGACATGCATAGAAAGAAAAGTACAGACACAAAATAT
ATTTACTGATTTCCCGCCCCCCCAAACCAGATCTCAAGGAGTAATTATGT
ATATATAAAATTTATAATAACAAAATCTCTGTGTTTTATTTATTTATATA
TATATATATATATATAGTTATAGTTATAGTTATTATAAATTTCAAAACAA
ATGAAGGAATTTTCACATAATATTTATAACCTTCAAAGTACAATATTAAT
ATATGTCTGTCTGTTAGAAATAACAGCAGTTAGACTACAGGGCTTAACAT
AAAACCAGCTGACAACTGCGAAAAGCATCACTGGTCCAATATTCACCATT
ACTTATGAATCTGTTTCTTCCCGAACTTTCTTTTTTTACCCACATTACAA
TTTCATCATCCCGATATATTAAAAAACTTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAATATGTAATATTCACAATGTGAGATATTTT
TAATTTTATTTATTTTCTATACAGTATTTATTCTACAAGGTCTCCTTGTT
CCCTTGTGTATATGAAGATGCCCATTCTCAATTGCTTTGTGAGTAAAAGT
TTTATATTTTTACAAGCCCAGTTATTACCAGCTAACATCAGGATCAAATC
AAAACCAATTTCACTAGTGTATGTTATAATGAGCATTGCCTGCAAACTAC
AAATAATGTATCATATTTCAACTGAAATTTACTATTTCACATATATTCAA
ATATTTTTTTACCACCCCCCCTCTGGTTACAACAGACTTTGAAATTGAAG
ACATATCCTTGTAAATGTTTGAAAATTGAGTACTTTGAGAATTGGGTTTC
GCCTAGTTATTAATGTTATAGGCAATAAATATCTTTCTTGATTCCAATGT
GCCATTTTATTCACTGGCCATACAATTTTTCGTGTAGATATAGTCAGTTT
AGGGGAATATATTCTGTTCCATTTTGATAGAATCTTTAATATCTCTCAAT
GTATTCAATAATAATGGCACATTTTTTTTGTAACTTACTTCATTTTATAG
CCACAATTTTGATAAACTACTGTTCAATCTTTATTTGAGTAAAGGGAGCT
TAGAAAGCTAGGAATATATTTTTAAATATT

Query= MSMg01no157_n14.b1 MSMg01no157_n14.b1 CHROMAT_FILE:
MSMg01no157_n14.b1 PHD_FILE: MSMg01no157_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:16 2005
         (316 letters)



>mm_chr3_73777943_73778658
          Length = 716

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatagtaaagaacatctcataaatgagatcaaatggtaagaaaatagtcggtga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatagtaaagaacatctcataaatgagatcaaatggtaagaaaatagtcggtga 263

                                                                       
Query: 64  tgaagagctattacaaaacgtgggaagcttgtgacacccaacgaggcagctggcaactct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaagagctattacaaaacgtgggaagcttgtgacacccaacgaggcagctggcaactct 323

                                                                       
Query: 124 ctagaacattgctgtaaagtctcattaccacagcttgatggcaattgttcaggctctaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctagaacattgctgtaaagtctcattaccacagcttgatggcaattgttcaggctctaaa 383

                                                                       
Query: 184 cagctgtctggattgctggagcagctgttacctggaaagatcatttgaagagatgagtct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagctgtctggattgctggagcagctgttacctggaaagatcatttgaagagatgagtct 443

                                                                       
Query: 244 cctgtagactatctaataactctcctaaagagggacatgcatagaaagaaaagtacagac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctgtagactatctaataactctcctaaagagggacatgcatagaaagaaaagtacagac 503

                     
Query: 304 acaaaatata 313
           ||||||||||
Sbjct: 504 acaaaatata 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no157_n14.g1 MSMg01no157_n14.g1 CHROMAT_FILE:
MSMg01no157_n14.g1 PHD_FILE: MSMg01no157_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:16 2005
         (287 letters)



>mm_chr3_73925798_73926484
          Length = 687

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatatgtaatattcacaatgtgagatatttttaattttatttattttctatacagtatt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 caatgtgtaatattcacaatgtgagatatttttaattttatttattttctatacagtatt 474

                                                                       
Query: 61  tattctacaaggtctccttgttcccttgtgtatatgaagatgcccattctcaattgcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tattctacaaggtctccttgttcccttgtgtatatgaagatgcccattctcaattgcttt 414

                                                                       
Query: 121 gtgagtaaaagttttatatttttacaagcccagttattaccagctaacatcaggatcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtgagtaaaagttttatatttttacaagcccagttattaccagctaacatcaggatcaaa 354

                                                                       
Query: 181 tcaaaaccaatttcactagtgtatgttataatgagcattgcctgcaaactacaaataatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcaaaaccaatttcactagtgtatgttataatgagcattgcctgcaaactacaaataatg 294

                                                        
Query: 241 tatcatatttcaactgaaatttactatttcacatatattcaaata 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tatcatatttcaactgaaatttactatttcacatatattcaaata 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)