Query= MSMg01no158_e01.b1 MSMg01no158_e01.b1 CHROMAT_FILE:
MSMg01no158_e01.b1 PHD_FILE: MSMg01no158_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:45 2005
(618 letters)
>mm_chr3_145160412_145161429
Length = 1018
Score = 1174 bits (607), Expect = 0.0
Identities = 613/615 (99%)
Strand = Plus / Minus
Query: 4 ggaattctgtaattctgtgaccacatcaaaactaaaaaggggcaaaaaagaaaagaaaag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ggaattctgtaattctgtgaccacatcaaaactaaaaaggggcaaaaaagaaaagaaaag 759
Query: 64 aaagaaagaacattgtctagaaaaactaggcagttgcataatgctacaaaccctagaata 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aaagaaagaacattgtttagaaaaactaggcagttgcataatgctacaaaccctagaata 699
Query: 124 aatatttttctaagtggataaacccagaagtctttaaagggaagccaaggaacaccatgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aatatttttctaagtggataaacccagaagtctttaaagggaagccaaggaacaccatgg 639
Query: 184 tgccatgatttaaataaaaggccaatgagaaagatgtccttatccctggttgaaaatact 243
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 638 tgccatgatttaaataaaaggccaatgagaaagatgtacttatccctggttgaaaatact 579
Query: 244 tcaggaatcttccttgcttttagcaatgattatatttcctccaatagcattaaaaaaaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tcaggaatcttccttgcttttagcaatgattatatttcctccaatagcattaaaaaaaac 519
Query: 304 ttagtagctttacctttgccttagaaactactctcttagacattacttgtgctaatgacc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttagtagctttacctttgccttagaaactactctcttagacattacttgtgctaatgacc 459
Query: 364 aggtagccactgaagatattagtttatttagtgtattctttgaaaaggcactataaactg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aggtagccactgaagatattagtttatttagtgtattctttgaaaaggcactataaactg 399
Query: 424 aataacatgtataaaatattctgtggagagcagaggtatttacagaaaacttttccatct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aataacatgtataaaatattctgtggagagcagaggtatttacagaaaacttttccatct 339
Query: 484 tcataaatacccactgatgtgcaaatcttgggattacagtgcagggtctgtaaaaggatg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcataaatacccactgatgtgcaaatcttgggattacagtgcagggtctgtaaaaggatg 279
Query: 544 ctaaaccacagaacttattgttttattttattagatttctgttttagaacattacctgta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctaaaccacagaacttattgttttattttattagatttctgttttagaacattacctgta 219
Query: 604 aacatcagaaatgac 618
|||||||||||||||
Sbjct: 218 aacatcagaaatgac 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_e01.g1 MSMg01no158_e01.g1 CHROMAT_FILE:
MSMg01no158_e01.g1 PHD_FILE: MSMg01no158_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:45 2005
(299 letters)
>mm_chr3_145112804_145113505
Length = 702
Score = 528 bits (273), Expect = e-154
Identities = 295/303 (97%), Gaps = 5/303 (1%)
Strand = Plus / Plus
Query: 1 agacttagaggatctatgataaataagctgtcatggtctagcagctcaagaaagcttcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacttagaggatctatgataaataagctgtcatggtctagcagctcaagaaagcttcca 260
Query: 61 tgagcagaactctgtgatctgacaggaaagttatagtgtttgagccaagatgaggggatt 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tgagcagaactctgtgatctgacaggaaagttacagtgtttgagccaagatgaggggatt 320
Query: 121 ttcttccagaaccagaggacaggcaacatggctaagagagttggacagaaagcaggtaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttccagaaccagaggacaggcaacatggctaagagagttggacagaaagcaggtaca 380
Query: 181 acacaagaccagaaaggggcatactgaccacacacacacagctctatggcccctatccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacaagaccagaaaggggcatactgaccacacacacacagctctatggcccctatccca 440
Query: 241 aaggaattgtacagttatcttatg-actggggg-gagggga--cagtgatcaaattataa 296
||||| |||||||||||||||| | |||||||| | ||||| |||||||||||||||||
Sbjct: 441 aaggatttgtacagttatcttaaggactgggggtg-ggggaaacagtgatcaaattataa 499
Query: 297 ata 299
|||
Sbjct: 500 ata 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 702
Length adjustment: 9
Effective length of query: 290
Effective length of database: 693
Effective search space: 200970
Effective search space used: 200970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
