BAC Information

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BAC

Clone NameMSMg01-158F10
Chromosome3 (Build37)
Map Location 78,997,397 - 78,997,666
singlet/doubletsinglet
Overlap geneLOC100041741
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158F10.T7 (MSMg01no158_f10.b1)MSMg01-158F10.TJ (MSMg01no158_f10.g1)
ACCAG358576AG358577
length729781
length of high quality
(start - end)
270 (47 - 316)195 (78 - 272)
definitionCHROMAT_FILE: MSMg01no158_f10.b1 PHD_FILE: MSMg01no158_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:51 2005CHROMAT_FILE: MSMg01no158_f10.g1 PHD_FILE: MSMg01no158_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAATCACACTCATTATAGTGGGATTTGTGTTAAAAAATTAAAA
ATTTACAATTACTGAACTAAACTGTGGAGAGTTACAGACACTGAAAGATA
TTAAGAGCAACTCTTTATAAAGATGTTTTAATGTTATGAAGCAATATTCA
CATACATACACACATTCTTTAATATAAACAGAATGGAAAGTTATATGTAA
TACTCATGTGGAACACTCATGCATACATAATCTCTGCATACAATGAAGTT
CAGAATGAAAAGTATCATTATAGTAAAGAACGACCATGTTGGAACTGACT
CCTTTTCTTTTTTCCCCCCCCCCCCCCGTTTGTAATTTCTTTTTACACCA
TAATCACGGACCCCCCACAAAAAACCTCCAGCTCAACCTGGGTTTTCCTG
TACACGTTTAGAAACGTAAGTCATACAGGCACCCTGAGGGGTGAAATGCC
CTGTCATGTATTTGAATAACAGGACTACTAACTGCCTGTCTTTCCTCTGG
GAAAGAATTCAGAGGATTACTCCTACAGCCCATAAGCTTTCTAGGCTGAC
TTCTAGGAGGATATATCTCTAAACCCCCCCAGTATTCTTGCCCATGCTAC
GCTTTCGTCAAAGACCACAGTGAAAGTCTATGTCTCCCTCTATCCACAGC
GTTCCAAAGTATAATAGCCGCACTGTGTG
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGCAACTGCACATATGCTA
GGATAGTTAAAAGTAAAAATAACAGAGTCCCACGTGCTGACCAGGACACA
GAGCTGCATGTCTGTCCCTGCTAATGGACACACAAAATGGCAGAGTTAAT
TTAGAAGATTGTTGGGCCACTTGTTATGAAGCTGTACGTGTTGGATTTTT
GTTGTTTGTTTTGCTTTCTGTCGGTGTGAGCACGTGTTATCTCATAAGAG
GGGGACCTCAGCCGATATTTTGTTTCACCAAATTGACCTGCAGGCAAGCC
TATGTTTTTTTTTCCCCCCCCCCCCCCCCCCAGGGTCAAGTACTGTGTGG
TTTGTGTTTTAACCCCCCCCCTTAAAAAAAAAAATTATTTGGTGGGTGAT
GCTCTTCTATCCCTTACCCACAACTTACCACTATTTCCCTCTCCCCCTCT
TCTTATTTCTCCTTATCTATTTCTATCAATCTAATAATCCCCCTTATTTT
ATTCTTTTTTTTCTCCCCCCCACCTCTTTTTTTTTTTCTTTAATATTTCT
CCTCTCCCTCCTCCCTTTCTATTATTTTACTTTCCTTTTTTTTTCTCCAC
CTTCTCCCTTTTCCCCCACCCTTTTTACTCTCTTTTCTCCTATAATTTTT
CTTTCTTCTTTCACCTCCCACCCTCTTTTTTTCTTTTCCCCTCACCCCCC
CCCTCTCCTCTTTTTTTACCCTCCTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_f10.b1 MSMg01no158_f10.b1 CHROMAT_FILE:
MSMg01no158_f10.b1 PHD_FILE: MSMg01no158_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:51 2005
         (270 letters)



>mm_chr3_78997193_78997866
          Length = 674

 Score =  472 bits (244), Expect = e-137
 Identities = 263/270 (97%), Gaps = 4/270 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaatcacactcattatagtgggatttgtgttaaaaaattaaaaatttacaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatcacactcattatagtgggatttgtgttaaaaaattaaaaatttacaatt 264

                                                                       
Query: 65  actgaactaaactgtggagagttacagacactgaaagatattaagagcaactctttataa 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actgaactaaactgtggacagttacagacactgaaagatattaagagcaactctttataa 324

                                                                       
Query: 125 agatgttttaatgttatgaagcaatattcacatacatacacacat-tct--t-taatata 180
           ||||||||||||||||||||||||||||||||||||||||||||| | |  | |||| ||
Sbjct: 325 agatgttttaatgttatgaagcaatattcacatacatacacacatatataatataatgta 384

                                                                       
Query: 181 aacagaatggaaagttatatgtaatactcatgtggaacactcatgcatacataatctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacagaatggaaagttatatgtaatactcatgtggaacactcatgcatacataatctctg 444

                                         
Query: 241 catacaatgaagttcagaatgaaaagtatc 270
           ||||||||||||||||||||||||||||||
Sbjct: 445 catacaatgaagttcagaatgaaaagtatc 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 674
Length adjustment: 9
Effective length of query: 261
Effective length of database: 665
Effective search space:   173565
Effective search space used:   173565
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)