Query= MSMg01no159_b05.b1 MSMg01no159_b05.b1 CHROMAT_FILE:
MSMg01no159_b05.b1 PHD_FILE: MSMg01no159_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:43 2005
(673 letters)
>mm_chr3_73362221_73363293
Length = 1073
Score = 1270 bits (657), Expect = 0.0
Identities = 666/669 (99%)
Strand = Plus / Minus
Query: 5 gaattctcttagtatgaacgtttctcctcactctcagggatttagcttttctgtcttcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaattctcttagtatgaacgtttctcctcactctcagggatttagcttttctgtcttcca 814
Query: 65 gaatgggattactgtcaggtctttaaactatcgagggtccactatgtaagagtccaagac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gaatgggattactgtcaggtctttaaactatcgagggtccactatgtaagagtccaagac 754
Query: 125 acacttgcttcattcctattgcatttccattactatcttcacgtcagtcacctctacaga 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 753 acacttgcttcattcctattgcatttccattactatcttcacgtcagttacctctacaga 694
Query: 185 actccttgacagaggaagcatcgttttattatttttaaccttagtgcatagcaatatgca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 actccttgacagaggaagcatcgttttattatttttaaccttagtgcatagcaatatgca 634
Query: 245 cattatattgccaggatatggcaaatgcatgtatggtaaattctttcaatgtatatgtca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cattatattgccaggatatggcaaatgcatgtatggtaaattctttcaatgtatatgtca 574
Query: 305 attagaataccttatctggccacttactctggtgctcttaaggggtgaaatcaggtctca 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 573 attagaataccttatctggccacttagtctggtgctcttaaggggtgaaatcaggtctca 514
Query: 365 tatttcataatataacatactcttccaactgcatagcatctaaaaggtattaaatattac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tatttcataatataacatactcttccaactgcatagcatctaaaaggtattaaatattac 454
Query: 425 cttatgctataatttaagtctgtcctattgtactagagtttcattccatgctatattacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cttatgctataatttaagtctgtcctattgtactagagtttcattccatgctatattacc 394
Query: 485 ttgcagttgacgtgctttataaatgcacctttatataaatagtaaattttaggatttata 544
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 393 ttgcagttgacgtgctttataaatgcacctttatataaagagtaaattttaggatttata 334
Query: 545 gataagattattattcactataatcttccaacgttgcaagatcttccatcaatcaggtgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gataagattattattcactataatcttccaacgttgcaagatcttccatcaatcaggtgt 274
Query: 605 ctgtgtagagaacttacaaagtacacatgtttagaggataagcaagaccaagatgatctg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctgtgtagagaacttacaaagtacacatgtttagaggataagcaagaccaagatgatctg 214
Query: 665 tactctaaa 673
|||||||||
Sbjct: 213 tactctaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_b05.g1 MSMg01no159_b05.g1 CHROMAT_FILE:
MSMg01no159_b05.g1 PHD_FILE: MSMg01no159_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:43 2005
(568 letters)
>mm_chr3_73222058_73223026
Length = 969
Score = 621 bits (321), Expect = 0.0
Identities = 547/741 (73%), Gaps = 184/741 (24%)
Strand = Plus / Plus
Query: 1 atacttagcccatttccctggaggagacagactatttttccttcagctgtttttgattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29 atacttagcccatttccctggaggagacagactatttttccttcagctgtttttgattac 88
Query: 61 ctaaagctcttcatttcaggaagagactttgaaaaatttatcctatgtatgttaatcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 ctaaagctcttcatttcaggaagagactttgaaaaatttatcctatgtatgttaatcaga 148
Query: 121 ttgatgtgggcagtattcaggtcttatttaggcaatcatatcgttgagaatt-gtgaata 179
||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||
Sbjct: 149 ttgatgtgggcagtattcaggtcttatttaggcaatcatattgttgagattttgtgaata 208
Query: 180 cagcttgcctatcatatctggaagacaccgtctcacagaaagcttctggtcttctgcaac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cagcttgcctatcatatctggaagacaccgtctcacagaaagcttctggtcttctgcaac 268
Query: 240 ttagaatcaatactcttctgcttttgcaatgttgccggagactttggtatagcagcttca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttagaatcaatactcttctgcttttgcaatgttgccggagactttggtatagcagcttca 328
Query: 300 gtgtagttgtaccaacaggtgcttaaatgcagatgttctt-------------------- 339
||||||||||||||| |||||||||||||||||||||||
Sbjct: 329 atgtagttgtaccaactggtgcttaaatgcagatgttctttttttttttccattttttat 388
Query: 339 ------------------------------------------------------------ 339
Sbjct: 389 taggtatttagctcatttacatttccaatgctataccaaaagtcccccatacccacccac 448
Query: 339 ------------------------------------------------------------ 339
Sbjct: 449 ccccactcccctgcccacccactccccctttttggccctggcgttcccctgtactggggc 508
Query: 340 -------------------------------aaatcatgtagtagatggatgtactactc 368
|||||||||||||||||||||||||||||
Sbjct: 509 atataaagtttgcaaaaatgcagatgttcttaaatcatgtagtagatggatgtactactc 568
Query: 369 attaaaataaa-tcgctgattattgttaactttgaactggtaacatgtgagacaataaag 427
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 attaaaaaaaaatcgctgattattgttaactttgaactggtaacatgtgagacaataaag 628
Query: 428 gaatcgatggctttaagtttttctagaaaaaccttttgacagattcccccccacacacac 487
||||||||||||||||| ||||||||||||| |||||||| ||| ||||||| || ||
Sbjct: 629 gaatcgatggctttaaggttttctagaaaaaacttttgacggatcccccccc-ca-ac-- 684
Query: 488 acacaccttttctcagcattgtcatgtttaccttatttaggttgtgaatgtaaggctcag 547
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 -------ttttctcagcgttgtcatgtttaccttatttaggttgtgaatgtaaggctcag 737
Query: 548 ttgagggccctgtgggtctat 568
|||||||||||||||||||||
Sbjct: 738 ttgagggccctgtgggtctat 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space: 535122
Effective search space used: 535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
