BAC Information

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BAC

Clone NameMSMg01-159C12
Chromosome3 (Build37)
Map Location 64,110,984 - 64,111,271
singlet/doubletsinglet
Overlap gene4930518C23Rik
Upstream geneMme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004
Downstream geneEG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159C12.T7 (MSMg01no159_c12.b1)MSMg01-159C12.TJ (MSMg01no159_c12.g1)
ACCAG359174AG359175
length750745
length of high quality
(start - end)
323 (42 - 364)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no159_c12.b1 PHD_FILE: MSMg01no159_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:49 2005CHROMAT_FILE: MSMg01no159_c12.g1 PHD_FILE: MSMg01no159_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGC
CAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAG
GGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTT
GAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACA
AATTGGAAAAGAGGAAGTCAAAATATCACTGTTTGCAGATGATATGATAG
TATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATA
AACAGCTTTGGTGTATTAGCCGCACACCCAAATTAACTCAAACAAGTCAA
TGGCCTTTCTCTATACCAAGAATAAACAGGCTGAGAAAGAAATTAGGGAA
ACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGAC
TTTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGA
AGAAAGAAATTAAAGAAGTTCTCAGAAGATGGAAAGATCTCCCATGCTCA
TGGATTGGCATGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAAT
CTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACG
AATTGGAAGGAGCAATTTGGAAATTCGTCTGGAATAACAAAAACCTAGGA

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGGATTAACAAACATTGGGGTCTTCT
GGATTACCAGCTGTGGTAAAGAATTATTTGATGGAGTGGTACAGAATAGT
TATTTCTTTTGACCCTAGCAATGAATTGGTTGTTCTAAGCCTGTGGCCAT
CAGGCCAAATGCATTCAGAATGTCTATCAGAAATATTAATAGTCAAAGTG
TGGTAAATATCAGAATCACCACGATATATCTTTAAACAGACTACTGGACT
CCTTCTCTAGTATTCCACAATAAGTAGGTATACTTAGAGGCCTGGAACTT
TGCTTTTCTCTTTTTTTGTACGCGCCCCCCCGCTACAGCCACAGAGTCAC
ACTTTCAGGACCATCAACGAGCAAACATTTTTCTGTACATTGACTCTGAG
GAGGATCCTTGTGGTCCTAAGATCACAAAGCAGAGTTTGGGGGGTGGTGG
TGGTAGCCCTGCTTGTTTCTCCAGTTGAATTCATTCTGTTGCCACAGCAG
TACAAGTTAGAATACAAAACATGTTCATTATCTGAAGTTAGGGATATAGC
AGTCCAAAATGACAAACAATGTGTTCTATAAGGATGATCCACGTGTTTTG
ATTTTTCTGGGGAACTTATCCACCCTTTGAAGTTGTTTAAAACAACAAAA
GGCCTCGAATTATTTTGCGTGGCAGGATAAAAATGAACTGCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_c12.g1 MSMg01no159_c12.g1 CHROMAT_FILE:
MSMg01no159_c12.g1 PHD_FILE: MSMg01no159_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:49 2005
         (291 letters)



>mm_chr3_64110784_64111474
          Length = 691

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggattaacaaacattggggtcttctggattaccagctgtggtaaagaattatttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggattaacaaacattggggtcttctggattaccagctgtggtaaagaattatttgat 260

                                                                       
Query: 61  ggagtggtacagaatagttatttcttttgaccctagcaatgaattggttgttctaagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagtggtacagaatagttatttcttttgaccctagcaatgaattggttgttctaagcct 320

                                                                       
Query: 121 gtggccatcaggccaaatgcattcagaatgtctatcagaaatattaatagtcaaagtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggccatcaggccaaatgcattcagaatgtctatcagaaatattaatagtcaaagtgtg 380

                                                                       
Query: 181 gtaaatatcagaatcaccacgatatatctttaaacagactactggactccttctctagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaatatcagaatcaccacgatatatctttaaacagactactggactccttctctagta 440

                                                           
Query: 241 ttccacaataagtaggtatacttagaggcctggaactttgcttttctc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccacaataagtaggtatacttagaggcctggaactttgcttttctc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)