Query= MSMg01no159_j21.b1 MSMg01no159_j21.b1 CHROMAT_FILE:
MSMg01no159_j21.b1 PHD_FILE: MSMg01no159_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:22 2005
(267 letters)
>mm_chr3_61028138_61028804
Length = 667
Score = 493 bits (255), Expect = e-144
Identities = 261/263 (99%), Gaps = 1/263 (0%)
Strand = Plus / Minus
Query: 5 gaattccttgttgcagcaagggttgatgggcaatgttcatgcagggagcatctgtgagtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaattccttgttgcagcaagggttgatgggcaatgttcatgcagggagcatctgtgagtg 263
Query: 65 gatgcacctcttgataaagtctatcactttatttccactctgattccatctttgtatcta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatgcacctcttgataaagtctatcactttatttccactctgattccatctttgtatcta 203
Query: 125 tttagctgaagtggacacaggtgagaggctaaggtagacttgtggaggaacgtttcactg 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 202 tttagctgaagtggacacaggtgagaggctaaggtagacttgtggaagaacgtttcactg 143
Query: 185 aaacagacataggaaaaaggacgttctcctaaagcaagcacatggaaaggacacatgatg 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 142 aaacagacataggaaaaaggacgttctcctaaagcaagcacatg-aaaggacacatgatg 84
Query: 245 aaggaatctttgctaaggaagca 267
|||||||||||||||||||||||
Sbjct: 83 aaggaatctttgctaaggaagca 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space: 169764
Effective search space used: 169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no159_j21.g1 MSMg01no159_j21.g1 CHROMAT_FILE:
MSMg01no159_j21.g1 PHD_FILE: MSMg01no159_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:22 2005
(288 letters)
>mm_chr3_60946052_60946739
Length = 688
Score = 524 bits (271), Expect = e-153
Identities = 283/287 (98%)
Strand = Plus / Plus
Query: 1 acactgacaggttccactttggacctcttagaacccagatgcctaccactgtatttttac 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 acactgacaggttccactttggacctcttagaacccagctgcctaccactgtatttttac 260
Query: 61 tgtgaatttgtaaaattcaattatgcttcagaaaacataaatttatgtccttactaagaa 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgaatttgtaaaattcaattatacttcagaaaacataaatttatgtccttactaagaa 320
Query: 121 cctaaacaaagtgagcatttaattaggaaacaaataacaaattaaatagaaatataataa 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 cctaaacaaagtgagcatttaattaggaaacaaataataaattaaatagaaatataataa 380
Query: 181 tttgtgaagtgcatttccctaatgtgctatttagtcaaaatatattaaaactcctttcta 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtgaagtgcatctccctaatgtgctatttagtcaaaatatattaaaactcctttcta 440
Query: 241 agaaaggctataagctattaattaaatccatgttatctgatgcttgt 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaggctataagctattaattaaatccatgttatctgatgcttgt 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
