BAC Information

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BAC

Clone NameMSMg01-161I17
Chromosome3 (Build37)
Map Location 93,625,041 - 93,625,395
singlet/doubletsinglet
Overlap genenone
Upstream geneKprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4
Downstream geneTdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161I17.T7 (MSMg01no161_i17.b1)MSMg01-161I17.TJ (MSMg01no161_i17.g1)
ACCAG360921AG360922
length1,2901,236
length of high quality
(start - end)
359 (42 - 400)383 (69 - 451)
definitionCHROMAT_FILE: MSMg01no161_i17.b1 PHD_FILE: MSMg01no161_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:16 2005CHROMAT_FILE: MSMg01no161_i17.g1 PHD_FILE: MSMg01no161_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTAGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTCTATATGTTCTCTACCGGACACCAAATAATACCGATATATTTGAAA
TGTGAATGTATAGCATTTTCCAAACTCATCCAAAGTTCTATATAATAATT
GTTGTACTTTATGGAAAGAAAGCCAGGATATGTTTATTAGAACCAAATAT
GGTAAGAGCTGGAGGAGTGCTTTGGCGGGCCCATGCTGAGGCATCCCTTC
CTCCTGTGGTACCAGCCACAGTATAGAAGAGTGATTATTGTATAGATTGG
TTTAATACAGGTTTCCTGTAGAATAGAGTTTATTTAGAGCATGGGAATGG
GAGTTGACAAGGGGTGAGAAGAGAGTAGAGGACAGAGAAAGAAGTGGGGT
TTTTTTTTTNNNNNNNNNNNNNNNNNNNGNNGGNGGGGNNNNNNNNGGTT
TTTTTTTTTTCCCCCCCCCCCCCGNGGGNNGGNNNNNNNAAAAAAAAAAG
AAGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGNNNNNNNNNGGGGGGNGGGGGGGGGGGGGG
GGNGGNGNGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGNNGGGGGGGGG
GGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGNNGGNGGGGGGNNGNGGGGGGGGGGGGGGGGGGGGGNGGGGNGNNGG
NNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNNGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
NGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGNGGGGGGGGGGGGGGGGG
GGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGNGGGGGGGGGGTTGGGGNGGGGGGGGGGGGGGGGGGGGGTGGGNGGG
GGGNGGGNGNGGGGGGGGNGTGGGGGTGGGNGGTGGTTTTGTTTTTTTTT
TTTTTTTTNGGGTTTGTTGTTTTTTTTGTTTTTTTGGTTTTTGTTTGGTT
TTTTGTTTTTTTTTTTTTTTGTTGTTTTTGTGTTGGTTTT
NNGGCGCATGGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTGTTCCAGACTGCTGCCTGTTTGTAGCTGG
CCAAGAATTCAGGGCTCACAAGGCCATCCTAGCAGCTCGCTCTCCAGTTT
TCAGAGCCATGTTTGAACATGAAATGGAGAAGAGACTAACAAACCGAGTT
GATATCAATGACTTGGATCCCAAAGTCTTCAAGGAGATGATGGGCTTCAT
TTACACTGGGAAGTTGCCAAACCTCCACAGCCACTCCATGGCCTGTGATC
TGCTGGCAGCTGCTGACAGGTATGGCCTGGAGGGCTTGAAGGTCATATGA
GAGGATGCCCTCTCAAGGAACCTCTCTGTAGAGAATGCTGCACACACTCT
CATCCTGGCTGACCTCCACAACATACAGCAGCTGAAGACTGAGGCCCTGT
TTTTCCCCGCCCCCCCTGCTTCTGTGGTCTCTGAGACCAAAAAGGGGAAG
TCAATGATGGAGTCCCATCCCCTGTTCGTGGCTGAAACATTCCACTTCCT
GGGTCCTGCACAGTGTTTCTTGGAGCCCTCACTCAAACAACTAAAATGAA
TTTAGGGGATGGACAGCTATGACCAACATCTGTCTTCCAACAGCTATAAC
CAGTGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACAT
TTATAGTAAATCTAGGAAAAGACAGCATGGTGGCTCAGGATTTAAAACAG
CTGTAATATGTTAAAATGCTGGGTGGGGGATGGAGTCTGGCCAGTCTACT
TGGAATCTACTCTGTTAATGTTCTAAAATGATTTTTGTCTGAATCCTTGT
AAACTGTTTATTATTTTACTTGTTGGCCTTTACATCTTATTTACCCAATT
TTCTTTTATATATTTGTTTGTCNTTTTTCTTATTTAATATTATTCTGTTT
TTCTCTATTTTCTATTATTTATTACTTCTTTGTCTTTCTTTTACTATAAT
TTAAACTTGCATTCTTTCTTTTATCTTCACTAATTTATTTTTTTCTTTCC
TTTTTTTTCTTTCTCTTTTCTTCTTATTTTTTGATTTTTATTCATTTTCT
TTCTCATTTCTTCTATCTTCATTTCTCATTTTTTTCTTTCTTCTTATTTT
ACTCTTCTTTGATTTTGTCTATTTTCTTTCTTATTTTACTTTAATATTCT
ATTTGATCTTANTCTTATCCTCTTTTTCTTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_i17.b1 MSMg01no161_i17.b1 CHROMAT_FILE:
MSMg01no161_i17.b1 PHD_FILE: MSMg01no161_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:16 2005
         (359 letters)



>mm_chr3_93624838_93625596
          Length = 759

 Score =  658 bits (340), Expect = 0.0
 Identities = 352/356 (98%), Gaps = 2/356 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattctatatgttctctaccggacaccaaataataccgatatatttgaaatgtg 63
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattctatatgttctctacaggacaccaaataataccgatatatttgaaatgtg 263

                                                                       
Query: 64  aatgtatagcattttccaaactcatccaaagttctat-ataataattgttgtactttatg 122
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 264 aatgtatagcattttccaaactcatccaaagttc-attataataattgttgtactttatg 322

                                                                       
Query: 123 gaaagaaagccaggatatgtttattagaaccaaatatggtaagagctggaggagtgcttt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaaagaaagccaggatatgtttattagaaccaaatatggtaagagctggaggagtgcttt 382

                                                                       
Query: 183 ggcgggcccatgctgaggcatcccttcctcctgtggtaccagccacagtatagaagagtg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggcgggcccatgctgaggcatcccttcctcctgtggtaccagccacagtatagaagagtg 442

                                                                       
Query: 243 attattgtatagattggtttaatacaggtttcctgtagaatagagtttatttagagcatg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 attattgtatagattggtttaatacaggtttcctgtagaatagagtttatttagagcatg 502

                                                                   
Query: 303 ggaatgggagttgacaaggggtgagaagagagtagaggacagagaaagaagtgggg 358
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 503 ggaatgggagttgacaaggggtgagaagagagtagagggcagagaaagaagtgggg 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)