ATAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTTATGTACGCAGTTGATCTTTCCTGATCAATTTGCAT
CAAGAAACAGTTGATACCTCCAGTGGTCTCAGTGAGTGTTTCATGGTCTC
TCATCCCAGGAAATGTTACCGGAGAATGTTTATATCGGTGCATCACATCT
AGTCTAATAATAGATATCCTCCTCTACCTTCACCTCCTTAGCACTTTATT
GTCTAAGTTTGTTTGACAGTTTGATTAATTTACTTTTCACAAATACCTGC
TGCTAGAGGAAGAGAATTGAAAGACGCTAAAGACTCAAGCATTCTTTCAT
TGACTTGTAACAATATTCTCACTCTCTTTTGCTTGAAGCAACAATTATAC
TCATATTACTATAGAATTCCCTTACATTTTGGCATCATAGCCCAAGGAAG
TTTGTTTAACAGAGATACAGCCTCTGGTCTTTGAGCCAAAATAACCTCCT
TGGTCTTTTAATGAATACTTTCTCTATCTAAAACTAGTTTCTTTAAGCCA
AGGAGCTAAACATTTTGATTATTGACTGTATCTTTTCTATTTTATTTTAT
TTTATTTTATTTTATGTTATGTTATTTTATTTTATTAATTAATTAATTAA
TTAATTAATGAATTTTCTGCCCCCACACCCCCTTATTTCTTACCTCCCTT
CACCT

TGAATGGGAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAATTCTTCACCATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGGGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAATGGTAAGAAGGA
CACATGCTCCACTACGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTCCTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGTACCTGGAGGGCATCATCCTGTGTGAGG
TAACACATTCACAACGGAACTCACACAATATGTACTCACTGATTAGTGGA
TAGTAGCCCAAAACCTAGGATACCCAGGATATAAGCTGCAATTTCCTAAA
CACT

Query= MSMg01no162_a06.b1 MSMg01no162_a06.b1 CHROMAT_FILE:
MSMg01no162_a06.b1 PHD_FILE: MSMg01no162_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:17 2005
         (601 letters)



>mm_chr3_12193374_12194372
          Length = 999

 Score =  924 bits (478), Expect = 0.0
 Identities = 565/594 (95%), Gaps = 7/594 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgttatgtacgcagttgatctttcctgatcaatttgcatcaagaaacagttga 63
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 204 ggaattctgttatgtacgcagttgctctttcctgatcaatttgcatcaagagacagttga 263

                                                                       
Query: 64  tacctccagtggtctcagtgagtgtttcatggtctctcatcccagga-aatgttaccgga 122
           | ||||||||  ||||||| |||||||||||||||||||||||| || ||||||||| ||
Sbjct: 264 t-cctccagtattctcagttagtgtttcatggtctctcatccca-gacaatgttaccaga 321

                                                                       
Query: 123 gaatgtttatatcggtgcatcacatctagtctaataatagatatcctcctctaccttcac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaatgtttatatcggtgcatcacatctagtctaataatagatatcctcctctaccttcac 381

                                                                       
Query: 183 ctccttagcactttattgtctaagtttgtttgacagtttgattaatttacttttcacaaa 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 382 ctccttagcactttattgtctaagtttgtttgacagtttgattaatttacttttcataaa 441

                                                                       
Query: 243 tacctgctgctagaggaagagaattgaaagacgctaaagactcaagcattctttcattga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tacctgctgctagaggaagagaattgaaagacgctaaagactcaagcattctttcattga 501

                                                                       
Query: 303 cttgtaacaatattctcactctcttttgcttgaagcaacaattatactcatattactata 362
           ||||||||||||  |||||||||||||| ||||||||||||||||||||| |||||| ||
Sbjct: 502 cttgtaacaatagcctcactctcttttggttgaagcaacaattatactcacattactgta 561

                                                                       
Query: 363 gaattcccttacattttggcatcatagcccaaggaagtttgtttaacagagatacagcct 422
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 562 gaattcccttagattttggcatcttagcccaaggaagtttgtttaacagagatacagtct 621

                                                                       
Query: 423 ctggtctttgagccaaaataacctccttggtcttttaatgaatactttctctatctaaaa 482
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 622 ctggtctttgagccaaaataacctccttggtcttttaatgc-tactttctctatctaaaa 680

                                                                       
Query: 483 ctagtttctttaagccaaggagctaaacatt-ttgattattgactgtatcttttctattt 541
           |||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct: 681 ctagtttctttaagccaaagagctaaacattgtt-attattgactgtatcttttctattt 739

                                                                 
Query: 542 tattttattttattttattttatgttatgttattttatttta-ttaattaatta 594
           |||||||||||||||||| |||| ||||  ||| |||||||| |||||||||||
Sbjct: 740 tattttattttattttatgttattttataatatgttattttaattaattaatta 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 999
Length adjustment: 10
Effective length of query: 591
Effective length of database: 989
Effective search space:   584499
Effective search space used:   584499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)