BAC Information

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BAC

Clone NameMSMg01-162A20
Chromosome3 (Build37)
Map Location 7,492,997 - 7,493,255
singlet/doubletsinglet
Overlap genenone
Upstream gene1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801, Pkia, LOC667807
Downstream gene3110050N22Rik, Il7, LOC620822, LOC633072, LOC545500, LOC620966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162A20.T7 (MSMg01no162_a20.b1)MSMg01-162A20.TJ (MSMg01no162_a20.g1)
ACCAG361292AG361293
length708693
length of high quality
(start - end)
293 (49 - 341)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no162_a20.b1 PHD_FILE: MSMg01no162_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:20 2005CHROMAT_FILE: MSMg01no162_a20.g1 PHD_FILE: MSMg01no162_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTATAAAGTAGGAGCACAGAGAGCAGAAGAATGCTCCAGCCC
AGCAATAAGGCGCAGGAGAAGAGTGGTGGGTTCTTCCTCTTTTATTTGTT
GTTATTGATTTAGTGACCCCTTTGAACTTAGTGATGAAGAAGATGATGGT
GATGATAACTGTGATGTTGATCACTCAAGTTGTGAGGAATCTGATTTTCA
GAGATAGTGTTTGACCTGGCATTTTTTCCTCCCTCCCTCCCTTCCTTCCT
CCCCTCCCTCCTTCTTTTTTTCCCTCCCTCCCTCCCTCTCTCCNNCNNNN
NTTTTTTTTTTTTTCCCNNNCCCCNNCCCCCNNNNNNNNNGNNNNNNNNN
NNNGNNNNNNNNCCCCCCCTTAAAAAAAAAATTTCCGGGGGGGGGGGGGT
TAATTTTCTTATCCCCCCCCTTACCCTATGGTCTCCTCCTTTTATGATAG
ATCGAGTTTTCCCTATAATTATACACATTTTTCATCCTCTGATTTAAAAA
CATCCATTTTTTTTTATATTTGTCAAGGCAATTTTTATAACTTCATTAAT
GTTCCTGTTTTTGTGTTTCCCACCTCCGTTTAATTATTTTTTCACCCCCT
CTTTTTTTAAGAACTTCCTGTATCATACATATTGGTAATTAGCCTTCTTT
TTCTCACC
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGCCTGATAAACAGCTTCAA
TGAAGTAGCTGGATATAAAATTAACTCAAGCAATTCAATAGCCTTTCTCT
ATGCAAAGAATAAAAGGGCTGAGAAAAAAATTAGGAAAACAACAGCCATC
ACAATAGAAATAGAAGATCTCAGAAGATGGAAAGATCTCCCAAGCCCATG
GATTGGCAGGATCAATATAGTAAAAATGGCTACTTGCCAAAAGCAATCTA
CAGATTCAATACAATCACCATTAAAATTCCAACTTAATTCTTCAACGAAT
TAGAAAGGGTTATTTGCACCCCCCCGCGCAATAAAAAAAACCTAGGAAAA
CAAAAACTCTTCTCAACAACAAAAGAACCTCTGGTGGAATCACCATGCCT
GACCTAATGCTGTACTACAGAGCAATTTTGATAAGAACTGCATGCACTGG
TATAGTGACAGAAAAGTAGACCAATGGAATAGAATTGAAGACCCTGAAAT
GAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAACTAAAACCA
TTGAGTGAAATAAAAAAAAAAAAAAGGACAGCATTTTCAATAAATGGTGC
TGGCACAACTGGTGGTTATCAAGTAGAAGAATGCGAATTGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_a20.b1 MSMg01no162_a20.b1 CHROMAT_FILE:
MSMg01no162_a20.b1 PHD_FILE: MSMg01no162_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:20 2005
         (293 letters)



>mm_chr3_7492794_7493486
          Length = 693

 Score =  456 bits (236), Expect = e-133
 Identities = 254/260 (97%), Gaps = 1/260 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctataaagtaggagcacagagagcagaagaatgctccagcccagcaataaggc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 ggaattcctataaagtaggagcacagagagcagaagaatgctccagcccagcaatgaggc 263

                                                                       
Query: 64  gcaggagaagagtggtgggttcttcctcttttatttgttgttattgatttagtgacccct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaggagaagagtggtgggttcttcctcttttatttgttgttattgatttagtgacccct 323

                                                                       
Query: 124 ttgaacttagtgatgaagaagatgatggtgatgataactgtgatgttgatcactcaagtt 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 ttgaacttagtgatgaagaagatgatggtgatgataactgtgatgttgatcactcaggtt 383

                                                                       
Query: 184 gtgaggaatctgattttcagagatagtgtttgacctggcattttttcctccctccctccc 243
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 gtgaggaatctgattttcagagatagtgtttgtcctggcattttttcctccctccctccc 443

                               
Query: 244 ttccttcctcccctccctcc 263
           | ||| |||||| |||||||
Sbjct: 444 tccctccctccc-tccctcc 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)