BAC Information

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BAC

Clone NameMSMg01-162C19
Chromosome3 (Build37)
Map Location 60,082,298 - 60,082,597
singlet/doubletsinglet
Overlap genenone
Upstream geneIgsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
Downstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162C19.T7 (MSMg01no162_c19.b1)MSMg01-162C19.TJ (MSMg01no162_c19.g1)
ACCAG361379AG361380
length685687
length of high quality
(start - end)
309 (51 - 359)278 (76 - 353)
definitionCHROMAT_FILE: MSMg01no162_c19.b1 PHD_FILE: MSMg01no162_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:29 2005CHROMAT_FILE: MSMg01no162_c19.g1 PHD_FILE: MSMg01no162_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAAAGAAAAAGTAGACACATTTTTATTTATTCACCACAAT
GATGCAAATTGGCTTCATATTAAATTAACATTTCATGAGTCTTTAAGTGC
ACACATTAGAAAAGATATGGCTTTACTTCTATTTGAAATTTATAGCAGCA
ATATTAGCCCACTATTAACATCTTTCTAAAATTGAGGTGTCAGAGTAGTT
TCTCTTTATCTAGAAAATAAATCCACACAATTTGTTTATTTTTTCCTTCA
GGGTGTTCTTTATTTGTAGAGCTGAAGATGACACCTGGAGCCTTGCACAC
ACTGGAGTCTATTTCGTCAGTACACCCACATGCATATCTCAAGTGCAATG
ATTGTGACTGCACAGGTTTTTAAATAAAGTCATTTCCGTATGACAGGAAT
TATAGTTATGCATTTACCTCAAGCCTAAACTGCCTTTAATTTAGATGAGG
CTCAGAAAACCACATCATACTTACTGCACCTACACAATGTATTTTTCAAA
TTTATCTTTAATGCACTACTGAATGACCTGAAACAGGAAAAAAGTGTCTT
AGCTCTCAAAAGCTCTATAAAAAAAGGAAAACTTTTTTTATTACTAAAGT
AATATGGATTCAGAGTTGAGTCAGAAGTGAATTCC
TACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATTCAGGTCTTGGGACATT
TTTTATTGGTAAATTTTTATTACTGCATCAAACTCTCTGCTGATGGCAGA
CCTTTTAGATTACGTATTTTGTGTTAGTTGAATTTTGCAGGTCATAGAAA
TCCAGAAATTCATTTTCTTACATTTTAAAATTTAGGAGTAAATAGGTTTT
AAGGCATGTCCTGGTGTTTATCTGAATTACCATGATATTTGTCATAATGC
CTCCACCTTCATTTCTATTTTTATTTTTAAAAGTAAATATTAATAATTTT
AATAANTTTATTACCCTNATCAAACCCTCATGTTATAAGCATTTCTATAT
AATGAAGTAGAACCTCAAATATTAATTCTTTAATATAACCAATTGTATTA
AAATTCATATTTAGAGCACTCAGATATAATAATAGTTCCTAGTAGAGAAG
GGGACAAATTAAAATAAAAGAGGAATAAGCCAAGAAAATGAAAGAATACA
AAGAACCTCCAAAGGCAGTTTTAAAATCAAGAATTCAGGGGAAGGAATAC
TCACAAACTGACCATGAATGAGAGCTTAGATATAACAAAAAGCAACTCAG
AATCATAAATGATAACCCAAACCCCCAAATTTTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_c19.b1 MSMg01no162_c19.b1 CHROMAT_FILE:
MSMg01no162_c19.b1 PHD_FILE: MSMg01no162_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:29 2005
         (309 letters)



>mm_chr3_60082094_60082803
          Length = 710

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%), Gaps = 1/300 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaagaaaaagtagacacatttttatttattcaccacaatgatgcaaattggct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaattctaaagaaaaagtagacacatttttatttattcaccacaatgatgcaaattggct 445

                                                                       
Query: 65  tcatattaaattaacatttcatgagtctttaagtgcacacattagaaaagatatggcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcatattaaattaacatttcatgagtctttaagtgcacacattagaaaagatatggcttt 385

                                                                       
Query: 125 acttctatttg-aaatttatagcagcaatattagcccactattaacatctttctaaaatt 183
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acttctatttgaaaaattatagcagcaatattagcccactattaacatctttctaaaatt 325

                                                                       
Query: 184 gaggtgtcagagtagtttctctttatctagaaaataaatccacacaatttgtttattttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaggtgtcagagtagtttctctttatctagaaaataaatccacacaatttgtttattttt 265

                                                                       
Query: 244 tccttcagggtgttctttatttgtagagctgaagatgacacctggagccttgcacacact 303
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccttcaggctgttctttatttgtagagctgaagatgacacctggagccttgcacacact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 710
Length adjustment: 9
Effective length of query: 300
Effective length of database: 701
Effective search space:   210300
Effective search space used:   210300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)