BAC Information

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BAC

Clone NameMSMg01-162L22
Chromosome3 (Build37)
Map Location 39,018,625 - 39,018,878
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162L22.T7 (MSMg01no162_l22.b1)MSMg01-162L22.TJ (MSMg01no162_l22.g1)
ACCAG361773AG361774
length722785
length of high quality
(start - end)
256 (90 - 345)107 (75 - 181)
definitionCHROMAT_FILE: MSMg01no162_l22.b1 PHD_FILE: MSMg01no162_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:11 2005CHROMAT_FILE: MSMg01no162_l22.g1 PHD_FILE: MSMg01no162_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATGATGGAAAACTGCCTTAGAAGATATGAAGGGTCCTCTTTGAC
TTGTGTGCTCTCTTTCTCTACTATGTGCAGTCATCACAAAATAATAGGAC
TCTTGCTGTTCATAGTCTGTTAGCGTTTTCAGAACACAACCAGACGTTCA
GCTTACTAGTTATTTGGACTAATGTTAATTGTTTTCAAGAGGTATATCTA
AACTTGTAAAAGTATTGTGTTATTTAAACATAAAATAAGTCTGTAAAGTC
CCATGAGGGTACTCAATATTATCTCTGTTATGCAAATATAAACGGTCATT
GTTACAGATAATTTATTTTTTGTAACCCTCCCCTCGCCTCTGGTTGCTTC
ACTAGGTATGGAGTGTGTGTTGACTCCTGAGATTCCACAATGCAAGGTAG
ATGGGGTCAGCAAGGAACTCTGAGCAGGTCTGAAGAATCACAGTTCTGGA
AGGGAGACAACACGCAGCAGAGGCAACTTTCCTCTGACCCTCTTCAGNAG
GTGATGATTAGAGCAACTGACACATGGTGAAAAGCTTGATGCCACTCAAA
AGTGAAGCGCACAAACGAGCAGAAAACCGGATATGCAAGCAACTAGGATA
TATCTGATTTCTAAAAATAAATACATATTGGGGACACAGGTTGAAAAGTG
GACACAAGGAAACAAAAGGGGG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGACTTTTCATCTCAAACCAACTTAA
GGCTACCAAGGAAGGTGGGTGGAGAAGAGAACAGAGAAGCGGATCTCAGG
GGATCCTGGGGGTTGCTATGGGACAAATGGAGGTGAAGCACCTTTGAAGG
AGATTGAACAGATTTGAGGAACTCGGGATAAAGCTGGGGTAGAGATGTCA
CCCCCATGTGGGGAAAGGAAGTGGTGAGGGGGATACATAAAATGAGAAAA
AAAGGGACGNNCAAANGNGGGAAAAAAAATTTTTACAAAAAAGGAAAAAA
ATTGAAAAGGGGGGGTATTTTTTTTTTCCCCCCCCCCCCCCCCCCCGGGG
CGGAGGAAGGGGAGGAGGGGGGGGGGGGGGGAAACAAAGAAGACAAAGAA
AGAATTNTTTGAAAAAAAACCTTTTTCTTTTCTTTCATTTATTCCTTTTT
AATCTCCTTTTTTCCCCCCCCCCCTTATTTTTCCCCTTCCCCCCTTTAAC
CCACAATTATAACCCTCCCTCATCTTCCATTTCATTTTTCGGCGCCCGTT
TAAATATTTTTTCTCCATGAGCCGCCCTTCCCTTTCCGCCCCTTTTCCGC
CCGCACCGTTCGTTCGGTTTATCTGACCCTTGATTGCTGCCTTCACTTTG
TTATTGCGGCTCTTTGCCGCTTTTTTACTTCCCTTCCCTCTTTTTCATCC
TTTGCCCCTTACAACGGGTGGATTTCGCCTAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_l22.b1 MSMg01no162_l22.b1 CHROMAT_FILE:
MSMg01no162_l22.b1 PHD_FILE: MSMg01no162_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:11 2005
         (256 letters)



>mm_chr3_39018425_39019080
          Length = 656

 Score =  426 bits (220), Expect = e-124
 Identities = 246/256 (96%), Gaps = 4/256 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctctttgacttgtgtgctctctttctctactatgtgcagtcatcacaaaataatagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tcctctttgacttgtgtgctctctttctctactatgtgcagtcatcacaaaataatagga 395

                                                                       
Query: 61  ctcttgctgttcatagtctgttagcgttttcagaacacaaccag--acgttcagcttact 118
           ||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||
Sbjct: 394 ctcttgctgttcatagtctgttagcgttttcagaacacaaccagcaa--ttcagcttact 337

                                                                       
Query: 119 agttatttggactaatgttaattgttttcaagaggtatatctaaacttgtaaaagtattg 178
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 336 agttatttggactaatgttaattgttttcaaaaggtatatctaaacttgtaaaagtattg 277

                                                                       
Query: 179 tgttatttaaacataaaataagtctgtaaagtcccatgagggtactcaatattatctctg 238
           |||||||||| |||||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct: 276 tgttatttaagcataaaataagtctttaaagtcccatgtggctactcaatattatctctg 217

                           
Query: 239 ttatgcaaatataaac 254
           |||||| |||||||||
Sbjct: 216 ttatgctaatataaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)