Query= MSMg01no162_n09.b1 MSMg01no162_n09.b1 CHROMAT_FILE:
MSMg01no162_n09.b1 PHD_FILE: MSMg01no162_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:18 2005
(649 letters)
>mm_chr3_68150712_68151760
Length = 1049
Score = 1178 bits (609), Expect = 0.0
Identities = 636/645 (98%)
Strand = Plus / Plus
Query: 5 gaattctgactgaatatccttatctgggttttctcattttgttttgaagctgctttatct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgactgaatatccttatctgggttttctcattttgttttgaagctgctttatct 264
Query: 65 ctttaaacctaatcacagtgatgttatgtttcccacttgcattttgggaagatcgggtaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttaaacctaatcacagtgatgttatgtttcccacttgcattttgggaagatcgggtaa 324
Query: 125 gggaatcaatataaaaatgccagcacgttacattgtatttccttcaccccagctcctcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggaatcaatataaaaatgccagcacgttacattgtatttccttcaccccagctcctcct 384
Query: 185 agcccagccctccacagttctcacaagactttgacaagaacaagttcacaaaggctattg 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcccagccctccacaattctcacaagactttgacaagaacaagttcacaaaggctattg 444
Query: 245 tgtagtctaaactactgggtttcagtgaaggtgaggaaaaagcttaagattaaaatagct 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 tgtagtctaaactactgggtttcagtgaaggtgaggagaaagcttaagattaaaatagct 504
Query: 305 ttcatttccggtgagtttcactgggaaactgttcatctaaacctaaaaccaagttggatt 364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 505 ttcatttccggtgagtttcactgggaaactgttcatttaaacctaaaaccaagttggatt 564
Query: 365 catttcatagatatttaatagaaggctactgctacctgttggcactgtgctggctcacaa 424
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 catttcatagatatttaatagaaggctgctgctacctgttggcactgtgctggctcacaa 624
Query: 425 ataaggaatagcaaacactaccctccagggcctcacagaggtcaagagttgcagacagga 484
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 625 ataaggaatagcaaacactaccctccagggcctcacagaagtcaagagctgcagacagga 684
Query: 485 agacaggcatggaaactgaaatgcgctattgctgtaatggtgggtgcgatgagggcctac 544
|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 685 agacaggcatgggaactgaaatgctccattgctgtaatggtgggtgcgatgagggcctac 744
Query: 545 agacccaagtgtcaatccccacatgggcagttagaaaagtttcatcagaggtaactctga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agacccaagtgtcaatccccacatgggcagttagaaaagtttcatcagaggtaactctga 804
Query: 605 ctgagcctcaaaggaaaagttctagggcagcccaaggaaaagata 649
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctgagcctcaaaggaaaagttctagggcagcccaaggaaaagata 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no162_n09.g1 MSMg01no162_n09.g1 CHROMAT_FILE:
MSMg01no162_n09.g1 PHD_FILE: MSMg01no162_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:18 2005
(618 letters)
>mm_chr3_68156224_68157236
Length = 1013
Score = 1060 bits (548), Expect = 0.0
Identities = 600/618 (97%), Gaps = 5/618 (0%)
Strand = Plus / Minus
Query: 1 acagtgcatttgggtggacaggtggtgtgtctggggaacatgtataattaatcctgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 acagtgcatttgggtggacaggtggtgtgtctggggaacatgtataattaatcctgtttc 754
Query: 61 tctcttgtcactctgttctcaatcttcccaactttctctaattcaatgaacctgcagggt 120
||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 753 tctcttgtcactccggtctcaatcttcccaactttctct-attcaatgaacctgcagggt 695
Query: 121 tttaggtgacaacctgggcacacctgtctgtggaaaaatgacaccaagtctcctagggct 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 694 tttaggtgacaacctgggcacacctgtctgtggaaaaatggcaccaagtctcctagggct 635
Query: 181 tctcatcacttggcttgcccgtggtcccccccacccccccgacccccaagggtaactgag 240
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 634 tctcatcacttggcttgcccgtggtcccccc--ccccccc-acccccaagggtaactgag 578
Query: 241 atgactcagaagccagaaaactgtcgagcatttgcttacatatcaaagcacagcacaatg 300
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 577 atgactcagaagccagaaagctgtcgagcatttgcttagttatcaaagcacagcacaatg 518
Query: 301 ggatagggcttacatggccaagtatctgtgcaaattgcagaaaatagaagttttcaggtg 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gggtagggcttacatggccaagtatctgtgcaaattgcagaaaatagaagttttcaggtg 458
Query: 361 tgatctgattgccagagccattttgcaacagtcaggttaaggaattccaggataagaaca 420
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 457 tgatctgattgccagcgccatttggcaacagtcaggttaaggaattccaggataag-aca 399
Query: 421 ttttttttgttttaatttaaaatagaatttgtaggtcaaaaagaaaaaggagctcccatt 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 398 ttttttttgttttaatttaaaatagaatttgtagatcaaaaagaaaaaggagctcccatt 339
Query: 481 ctgtttcttggtcttgttgctttcctgacgcatactgtcaatattggcactcagtaagct 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctgtttcttggtcttgttgcttttctgacgcatactgtcaatattggcactcagtaagct 279
Query: 541 gcacagagccactgcagagtaatggccacagagaaagagtctagcactgtgctggtttgt 600
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gcacatagccaccgcagagtaatggccacagagaaagagtctagcactgtgctggtttgt 219
Query: 601 gctggtcatgtgagggat 618
||||||||||||||||||
Sbjct: 218 gctggtcatgtgagggat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1013
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1003
Effective search space: 609824
Effective search space used: 609824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
