BAC Information

Click to search

BAC

Clone NameMSMg01-163G01
Chromosome3 (Build37)
Map Location 87,195,005 - 87,342,826
singlet/doubletdoublet
Overlap geneFcrl1, Fcrl5, Etv3
Upstream geneLrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l
Downstream geneEG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163G01.T7 (MSMg01no163_g01.b1)MSMg01-163G01.TJ (MSMg01no163_g01.g1)
ACCAG362204AG362205
length719710
length of high quality
(start - end)
203 (72 - 274)232 (130 - 361)
definitionCHROMAT_FILE: MSMg01no163_g01.b1 PHD_FILE: MSMg01no163_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:58 2005CHROMAT_FILE: MSMg01no163_g01.g1 PHD_FILE: MSMg01no163_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,342,624 - 87,342,826)(87,195,005 - 87,195,236)
sequence
NTCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAGGATCCG
CGGAATTCCGGCTTTCCCATTCTAGGGGTTTCAGGTATGCATCATGGATT
TCCTGCCCTCATTTTAATGGCCCCACGCTTCTATTCCTGAGTTCATACTG
ATGCTCGCTGGCCGTCCCCACTAGCAGACAACCGGTGGCCAGCTGGCCTC
CCTGGTTTGATGGGCAACACCAACCAGAGAGCCTTCCTCTACCTGCTGGG
CCTGCTTTCTGATTCAGAGGTCCGCCAAGGCGCATAGAACGAAACTGATC
AAAACACAACCACCAAAGGCAACATGAGGGTTGAAGTCCTTCGTGGCCCG
ACCAGAGCCTGTTTCATCAGAGACCACTCGGTCCCCTTCCTGGCCTTTCA
CACATGCGTGTAATCCGCACCAAGTTATACGACACTCATCAAGAAACAGC
AATGACACCCTCAAGTGATCCACGTCAGTTCATTCTTTTCACCAGGTCTA
ACGTCTCCCGAGCTCCTTTTGTGCATGCATTTCAGTTATAGAAAATAAAA
CCAAACTAAACCAAACCTCCTCACTCCTTCAGAAGTACTACCCTCAATGC
CACTTAGTATGGAGTTTCTTGTCCCAGTTTCATTGTTGTCGGACGTTAGT
GAGTCAATCAATCCTTAGCGCCCGAACTGCCCATCCCCTTCGTCCTCAAT
CTTGAATCGCCAATATCAC
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCCCACGAAATTCCTTGGCAGGGACACCTTTGGA
ATCTTCCAGAGTCACAGGTTCTTCCCGAAATGCTGGCAGAAAGCCACAGG
CTTCCCAGAGGCTCCTTTTAAGGTGTTGTATGTGCATAAGACAAAATGCA
GCCAGGCTGACTGGGAAGAGGCCCAGTGGAAGACTTAGCCTTCTGTCTTC
TCTTCTTTAGTCCTTTCAGGTCTCCTCTGGACTCTATTCTAAGCCAAGGA
TAAACATTGCACATATGGACTATGATTACGCCATGTAGAATTATGTAAAC
AGCAACTATGGTTTGTTACTTACACCGCCCCCCGCCTGATGTGGCCTCCA
AGGATACTGGGGACAGGGCCACCTTGACAGCCAAATTTCCCCACACACTG
CGGTTCATTAGATGGGTCCTTCACCTACCCTGCGTGAAGCTGGAGCAAGT
CCTGCATAAACCACCCAGGAAAACCAACTTAGACGGAGAAGACAGAAGCA
TTTGCATCTGTTTGTTGCCCATTCATGTTGGAACACGAACTTTTATTTAC
AGGAGGAATACGTTGTGATGAAAGCAACTAAGGTCTTACACTAGACGGAT
TTTGTGACTCATATAGCACAACGCCCAGATCAATGGTTTTGCCGTTCTGA
TGTGCAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_g01.b1 MSMg01no163_g01.b1 CHROMAT_FILE:
MSMg01no163_g01.b1 PHD_FILE: MSMg01no163_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:58 2005
         (203 letters)



>mm_chr3_87342424_87343026
          Length = 603

 Score =  385 bits (199), Expect = e-111
 Identities = 202/203 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggggtttcaggtatgcatcatggatttcctgccctcattttaatggccccacgcttc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 403 ctaggggtttcaggtatgcatcatggatttcctgccctcattttaaaggccccacgcttc 344

                                                                       
Query: 61  tattcctgagttcatactgatgctcgctggccgtccccactagcagacaaccggtggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tattcctgagttcatactgatgctcgctggccgtccccactagcagacaaccggtggcca 284

                                                                       
Query: 121 gctggcctccctggtttgatgggcaacaccaaccagagagccttcctctacctgctgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gctggcctccctggtttgatgggcaacaccaaccagagagccttcctctacctgctgggc 224

                                  
Query: 181 ctgctttctgattcagaggtccg 203
           |||||||||||||||||||||||
Sbjct: 223 ctgctttctgattcagaggtccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no163_g01.g1 MSMg01no163_g01.g1 CHROMAT_FILE:
MSMg01no163_g01.g1 PHD_FILE: MSMg01no163_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:58 2005
         (232 letters)



>mm_chr3_87194805_87195436
          Length = 632

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctggcagaaagccacaggcttcccagaggctccttttaaggtgttgtatgtgcataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctggcagaaagccacaggcttcccagaggctccttttaaggtgttgtatgtgcataa 260

                                                                       
Query: 61  gacaaaatgcagccaggctgactgggaagaggcccagtggaagacttagccttctgtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaaaatgcagccaggctgactgggaagaggcccagtggaagacttagccttctgtctt 320

                                                                       
Query: 121 ctcttctttagtcctttcaggtctcctctggactctattctaagccaaggataaacattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttctttagtcctttcaggtctcctctggactctattctaagccaaggataaacattg 380

                                                               
Query: 181 cacatatggactatgattacgccatgtagaattatgtaaacagcaactatgg 232
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatatggactatgaagacgccatgtagaattatgtaaacagcaactatgg 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)