BAC Information

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BAC

Clone NameMSMg01-164G06
Chromosome3 (Build37)
Map Location 58,176,534 - 58,177,012
singlet/doubletsinglet
Overlap genenone
Upstream geneTm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
Downstream geneTsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164G06.T7 (MSMg01no164_g06.b1)MSMg01-164G06.TJ (MSMg01no164_g06.g1)
ACCAG362881AG362882
length798752
length of high quality
(start - end)
231 (39 - 269)480 (69 - 548)
definitionCHROMAT_FILE: MSMg01no164_g06.b1 PHD_FILE: MSMg01no164_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:14 2005CHROMAT_FILE: MSMg01no164_g06.g1 PHD_FILE: MSMg01no164_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTCAGTTCTGAGCCCCATTTTTTAAAGGGGTTATTTGATTTTCTGAAG
TCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCT
TATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCC
CATTTGTCAATTCTCGATCTTACTGCACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTTTTTTTTTTCTTCAAGGCTTTTCCCCACATACACC
CCTTTTTAGTGCTTTGAAAGACAGAGGCCCGNGATTTTTTTTGATANAAT
TAGATTTGACCCCAGCACAAAAGCGTAGGTTATATTTCGGTGCGGGGTCG
TTCTACACGATATTTACCATTTTGAGCCTGTCTTCACATTGTTGAAAACG
CTGTCTTCTCTTCCTCTGGATTGATTCTACCTTTCTCTTGTCTGAACTAT
TTTTGTCCCTTTTCTGATGTTTTTTTTATTCCTCACTCCTTTAATTTTAT
TACTTTTTTATTATATTGTCTATTTATTTTAATTTCTCTTTTTCTTTTTT
AACTATCTCTTTTTTCTTGCTACAAATTTTATTTTTATTTTTTCCCGTCT
ATCACCCGTTCAGACCGTTTTTACTCTCCTCTTCGATATTATTTATTCTA
CTTTACCTTTCTTTTTCATTGAAGCAATGTCATTTTTATCTTTTCTGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGTGACTGCAGGATCACAATGAAACTGCTTA
GCCGCTCACTTAGTCATATTACACATCACCGATAAGTCACTTTCGAGCTG
TGATTAACCAACTGTGCAAACAGCACCACTGTCAGAACAGAAAAGTCAGG
GCCCGTGCCTTATGCTCTAAATGATCATATTCAGTTACTGCAGTGTCTGA
ATCATGCCATCGAGGTGACCACTGAACATTCCAGGAACACCAGGCCTTAG
AAAGGGAACAGCTGTAGGAAAGACAGCACTTTCTAGCCTTAGTTTTCAAC
AGAACATTTATACAAAATTACTTTGCCCCTCTCTTATAATTAGTCATTTT
AAACTCTTGACGATCTTACCAGTCGAAAGACAGTGGGAAGAGGAGGAGCC
TGTGCCCTGCTCCGTGAGAGCAGGAGCTGCCAAGCCTCGTTTCTTTTGCT
CACACAAACTGACCTCTGTCACTGGCCACAGGAGGTAGGTATCAACTTGT
TCTACAGTATCAGTTGTTAAAACAATGCTTACATTTTTCTCATTTCTGAT
GTGTGTGTGTGTGTGTGTGTGAGTGTTTACCTAACCAATCCTGATAAGCA
CAAAAGGAAGGAAACTCTTCTCTATCTTTTCTCCTAAAACTTAATATAAC
ATATATCCTTACCTGGAATTGTTGTAGGTGCTGGGCCCTGAAAGACCAAA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_g06.g1 MSMg01no164_g06.g1 CHROMAT_FILE:
MSMg01no164_g06.g1 PHD_FILE: MSMg01no164_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:14 2005
         (480 letters)



>mm_chr3_58176334_58177212
          Length = 879

 Score =  890 bits (460), Expect = 0.0
 Identities = 475/480 (98%), Gaps = 1/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgactgcaggatcacaatgaaactgcttagccgctcacttagtcatattacacatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgactgcaggatcacaatgaaactgcttagccgctcacttagtcatattacacatca 260

                                                                       
Query: 61  ccgataagtcactttcgagctgtgattaaccaactgtgcaaacagcaccactgtcagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgataagtcactttcgagctgtgattaaccaactgtgcaaacagcaccactgtcagaac 320

                                                                       
Query: 121 agaaaagtcagggcccgtgccttatgctctaaatgatcatattcagttactgcagtgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaagtcagggcccgtgccttatgctctaaatgatcatattcagttactgcagtgtct 380

                                                                       
Query: 181 gaatcatgccatcgaggtgaccactgaacattccaggaacaccaggccttagaaagggaa 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 381 gaatcatgccatcgaggtgaccattgaacattccaggaacaccaggccttagaaagg-aa 439

                                                                       
Query: 241 cagctgtaggaaagacagcactttctagccttagttttcaacagaacatttatacaaaat 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 cagctgtaggaaagacagcactttctagccttaattttcaacagaacatttatacaaaat 499

                                                                       
Query: 301 tactttgcccctctcttataattagtcattttaaactcttgacgatcttaccagtcgaaa 360
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tactttgcccgtctcttaaaattagtcattttaaactcttgacgatcttaccagtcgaaa 559

                                                                       
Query: 361 gacagtgggaagaggaggagcctgtgccctgctccgtgagagcaggagctgccaagcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacagtgggaagaggaggagcctgtgccctgctccgtgagagcaggagctgccaagcctc 619

                                                                       
Query: 421 gtttcttttgctcacacaaactgacctctgtcactggccacaggaggtaggtatcaactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtttcttttgctcacacaaactgacctctgtcactggccacaggaggtaggtatcaactt 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 879
Length adjustment: 10
Effective length of query: 470
Effective length of database: 869
Effective search space:   408430
Effective search space used:   408430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)