BAC Information

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BAC

Clone NameMSMg01-164I16
Chromosome3 (Build37)
Map Location 6,337,111 - 6,337,227
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570
Downstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164I16.T7 (MSMg01no164_i16.b1)MSMg01-164I16.TJ (MSMg01no164_i16.g1)
ACCAG362987AG362988
length752747
length of high quality
(start - end)
---117 (69 - 185)
definitionCHROMAT_FILE: MSMg01no164_i16.b1 PHD_FILE: MSMg01no164_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:25 2005CHROMAT_FILE: MSMg01no164_i16.g1 PHD_FILE: MSMg01no164_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
ATCTATACATTTGTCCACCGGCTAGAGCTGCTTCATGTGTATTCCGCATC
CCTCAGCTGCATTAGGCAATTAGGAGCACGAGAGAGAGAGAGAGAGAGAG
TAGAGAGAGAGAGAGAGAGTGAGAGAGAGATGGTCAGTCATTAGAATCCA
ATCTTTCCTCATATGATTATATATGAAAATAATATTTATATGCTACCAAT
AAATTTGCATAAATGATTGAAGTAGCTAGAAAACAAAGTATCAAACTTTC
ATAAATCCAAAATGCTATTATTTTTTATATTTCTTAAGAGTCACTAGTAT
TCTTATCCTTTTATATTTCCCCCCCTCACCCCCAGAGTCTGTATATTGGA
AACTTTTCTGGGCCCCCCCCCACGATATATATTCATAACTTCGTGCGTCT
TGTCTCTTTTACTGTGTAATCTTATGCTGTTGATTTGTGTGAATCATATT
CACCTTCTTTCTTCTACTCTGATTTACATCATCTCTGTCCCTCTTTAACC
CTTGTACTCCCTGTTTTTTTTGAATCTCGTATTTGAAAGCCTGTGTTTTG
TTTTCCATAGGACGAATCTTTTTCCATATTTCACTCGATGTATTTTTACT
TTTTTGCTTTTCTTTATTTCCTCTTTCTTTTTCTTTCTTTGTCTGATTCT
TTTTTGCTTTGTTTCGCTTACCTGTTTCTTAGTTCCTTCCTTTTTGCTTT
GT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTTCCTCATCCTCTCCCAGATCCTCGCCTGT
TCTCCGATACGATGATCTCCATACATTCTTTATCTCTTCCTTTAGAAAAC
AAATAGCCAAATGAAAGAAACAGGAGTGTAAAATAGAACATAACAAACAA
AGACAAAATAATAAAAAAATACACCTATATAAGCAGAGATACACACACAC
ACACACAGACACACACTCTCACACACACTCTCTAGCCCTACCCACATAAA
GGTCGGAAACCATAATATATATGTAAAGAAAACAGGAAGGTTACAAGCAC
ACATAAGACAGAGCACATAATTAGTAGATATCTGAGAAAGGACAATATGC
ATTACTGTCCCGCCACAACTAATAACAAGAAAGAATTCTTCTTCCATATG
TGTATCCCAGTGCCAAATTACACAAGGCATCAAGTAGTCAGACACCTTTA
ATCTTCTCTAATTTGTATGAGCTTCACATTTCCTTATTTATATTTTAATA
CGTGATGGAGTTATGTATGACTTTGACATTTTGAAGAATACAGATTATTG
TGTTTTGTAAAATGTTCCTCGATTTGTGCTAGTATAATATTTTCTTATTA
TTATATTCCAGCCCTACATTTTTAGAAGAAAACCACAAAAGTGATACTGA
GTCCTTTCTACTGAGCCATTATAATTCAGGTCATTATTTATTAACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_i16.g1 MSMg01no164_i16.g1 CHROMAT_FILE:
MSMg01no164_i16.g1 PHD_FILE: MSMg01no164_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:25 2005
         (117 letters)



>mm_chr3_6336911_6337427
          Length = 517

 Score =  180 bits (93), Expect = 3e-50
 Identities = 111/117 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttcctcatcctctcccagatcctcgcctgttctccgatacgatgatctccatacattc 60
           |||||||||||||||||||||||||| ||| |||||| |||| |||||||||||||||||
Sbjct: 317 tgttcctcatcctctcccagatcctcccctattctccaatacaatgatctccatacattc 258

                                                                    
Query: 61  tttatctcttcctttagaaaacaaatagccaaatgaaagaaacaggagtgtaaaata 117
           |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 257 tttatctcttcctttagaaaacaaatagtcaaatgaaagaaacaggagtataaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)