XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AAAGCCCTTTGCTGTGGGACAGCCTTCCAATCAGTAACACTTCACTGATT
TTTATAGAAGCAAATAGAAACTGAACTCTGATGTTTCAGATATGTATCTG
AAAAAGCTGTGCTAATTATCATATGCTCAGTTAAAGCTAAGGGACAATAA
ATGGCTATTTCTAACAACTTATGTACTGAAATTTCAATTGTTAAACTGTT
TATATTTTCATTTAACCTAGAGCTTACAATACAGGTGTTGAAACTGCAGT
CATAACGAGATAATATATACTTTGGGGACAATATCTTCATGACTCCTGTT
TGATTGTTTGTTTATCCCCCCCCCCGTGAGCATTAAAAGGCTCCACGGGG
ATAGTCAGACAACAGAAGGTCTTCATGTTACCCAGAAGTAAGACCTATAC
AACAGCTTCATCTTATCCTTCAGACTTCAGTCAGAGAAACTATGACATTT
TGCAGACAGCTTTCCTTCTACTTTAGGGATTTTGGGTAACTGAGTCATTG
TGGGCTACTTAAGCCTTTAGTCACTAGGAACCTCATCCTGGGCGATACAG
CACATTTCGCCCAGATGGTAAATATGACCTCCTCTTTTGGCACAGTTATT
CCTGCTAAGATGGCTCTTGTCTACCCTAAATACCTCATCTCCTTCAGAAT
TAAAACACAACAATAAGCATCATCCTTCAACACTAAAATTTAACCAAAAT
AACAAAAAAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGTACAGGTACAAGAAAGTTGGGTGTTAGA
CTCAAAAAGTGGTACAAGTATCAACCCATTAAACCTGAGTCTCAGAGGTA
AATCTCAGTTCTTTACCAGTTCGTCCCAATTTTCACACACAATAAGGAAA
GCATCTATATGAAACCAGTGACAGGATAAAAAGCCATGAGGTCCAACGTG
GAGAAAAATTATGAGGGTCTTGAGATCAGAATGGCACAAATCCAAAGTGC
TGGCAGAACTGACTGCAGGTGCTAGTGTGGAGCAAAGAGAAGTCTCATTA
CTGCTGTTGTTTATGCCCCACCCCGACCCAAGTCACCCTTGAAGATAGCT
TGGCCGTTTCAGATGAAGCAAAAAAACATTCATATCATGTGATATAGCAT
ACTCCTTGGTACTTCACAAAGCCATTGGTATCTATATCTACATAAGCACA
CAGATATTTATAGCAGCTCTGCTCCTTTGTCAAAAGGTGGAAGCAACTGA
CATATCTTTCCCTGGAGGGATTGGAATGGCACATGTATTCATTTGAAGAA
AAATTTTGAACAATGAACAGGTCCGGGTTTCTGATAAATTGGAATAACTT
AAGGTACTTCGGCTGTTTATAATTAATTAGGGGAATTAACAAATCTCAAA
AGCCTTGTGCTCTGTTTTTCGCTCTCTTCCCCTTAACCTCCTTAACAAGA
ATTAACCCAGCCAATAAAC

Query= MSMg01no164_m09.b1 MSMg01no164_m09.b1 CHROMAT_FILE:
MSMg01no164_m09.b1 PHD_FILE: MSMg01no164_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:43 2005
         (317 letters)



>mm_chr3_80968287_80969003
          Length = 717

 Score =  551 bits (285), Expect = e-161
 Identities = 306/313 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaagccctttgctgtgggacagccttccaatcagtaacacttcactgattttt 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 517 gaattccaaagccctttgctgtgggatagccttccaatcagtaacacttcactgattttt 458

                                                                       
Query: 65  atagaagcaaatagaaactgaactctgatgtttcagatatgtatctgaaaaagctgtgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atagaagcaaatagaaactgaactctgatgtttcagatatgtatctgaaaaagctgtgct 398

                                                                       
Query: 125 aattatcatatgctcagttaaagctaagggacaataaatggctatttctaacaacttatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 397 aattatcatatgctcagttaaagctaagggacaataaatggctatttttaacaacttatg 338

                                                                       
Query: 185 tactgaaatttcaattgttaaactgtttatattttcatttaacctagagcttacaataca 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tactgtaatttcaattgttaaactgtttatattttcatttaacctagagcttacaataca 278

                                                                       
Query: 245 ggtgttgaaactgcagtcataacgagataatatatactttggggacaatatcttcatgac 304
           |  |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gaagttgaaactgaagtcttaacgagataatatatactttggggacaatatcttcatgac 218

                        
Query: 305 tcctgtttgattg 317
           |||||||||||||
Sbjct: 217 tcctgtttgattg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no164_m09.g1 MSMg01no164_m09.g1 CHROMAT_FILE:
MSMg01no164_m09.g1 PHD_FILE: MSMg01no164_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:43 2005
         (234 letters)



>mm_chr3_80782555_80783188
          Length = 634

 Score =  398 bits (206), Expect = e-115
 Identities = 227/234 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtacaggtacaagaaagttgggtgttagactcaaaaagtggtacaagtatcaaccca 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tctgtacaggtacaagaaagttgggtgttagactaaaaaagtggtacaagtatcaaccca 260

                                                                       
Query: 61  ttaaacctgagtctcagaggtaaatctcagttctttaccagttcgtcccaattttcacac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ttaaacctgagtctcagaggtaaatctcagttctttaccagttcctcccaattttcacac 320

                                                                       
Query: 121 acaataaggaaagcatctatatgaaaccagtgacaggataaaaagccatgaggtccaacg 180
           | |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 321 ataataaggaaagcatctatatgaaaacagtgacaggataaaaagccataaggtccaacg 380

                                                                 
Query: 181 tggagaaaaattatgagggtcttgagatcagaatggcacaaatccaaagtgctg 234
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggagaagaattatgagagtcttgagatcagaatggcacaaatccaaagtgctg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)