Query= MSMg01no164_n16.b1 MSMg01no164_n16.b1 CHROMAT_FILE:
MSMg01no164_n16.b1 PHD_FILE: MSMg01no164_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:49 2005
(320 letters)
>mm_chr3_103404097_103404817
Length = 721
Score = 549 bits (284), Expect = e-161
Identities = 308/316 (97%), Gaps = 3/316 (0%)
Strand = Plus / Plus
Query: 5 gaattcaattgtacctgagactgaaggcaggggtacccactccccgtctcagcccctccg 64
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 205 gaattcaactgtacctgagactgaaggcaggggtacccactccccatctcagcccatccg 264
Query: 65 gtactgctggtggctg-ctgggagtctgctagctcttactctccagccgaggcctgaatg 123
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 gtactgctggtggctggctgggagtctgctagctcttactctccagctgaggcctgaatg 324
Query: 124 gggtggtggtagggcagggcgg-cgggtaagaagagacctcatgaggtctttcctgggga 182
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 325 gggtggtggtagggcaggg-ggacgggtaagaagagacctcataaggtctttcctgggga 383
Query: 183 tacagcagggctatgaggaaaccacagataaatacggcaaaaagagagggtaccaattcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacagcagggctatgaggaaaccacagataaatacggcaaaaagagagggtaccaattcc 443
Query: 243 cagaactagacagagagttaccagagagaaccaaaggagttaccgagggaggagcctgtg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagaactagacagagagttaccagagagaaccaaaggagttaccgagggaggagcctgtg 503
Query: 303 aagagtctcacctttg 318
||||||||||||||||
Sbjct: 504 aagagtctcacctttg 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space: 221432
Effective search space used: 221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no164_n16.g1 MSMg01no164_n16.g1 CHROMAT_FILE:
MSMg01no164_n16.g1 PHD_FILE: MSMg01no164_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:49 2005
(526 letters)
>mm_chr3_103539656_103540581
Length = 926
Score = 978 bits (506), Expect = 0.0
Identities = 521/526 (99%)
Strand = Plus / Minus
Query: 1 ggtgcccttcccctgggtaggaacggggcagctggtgtacggtggctccctttattatgc 60
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 726 ggtgcccttcccctgggtaggcacggggcagctggtgtacggtggcttcctttattatgc 667
Query: 61 tcgaaggcctcctggaggacctggagggggtggtgaattggagaacactctgcagctgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tcgaaggcctcctggaggacctggagggggtggtgaattggagaacactctgcagctgat 607
Query: 121 caaatttcacttggcaaaccgaacagtggtggatagctcagtgttccctgcagagagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 caaatttcacttggcaaaccgaacagtggtggatagctcagtgttccctgcagagagcct 547
Query: 181 gatacccccctacgggctgacagcagatacatatatcgacctggcagctgatgaggaggg 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gatacccccctacggcctgacagcagatacatatatcgacctggcagctgatgaggaggg 487
Query: 241 cctgtgggctgtctatgccactcgagatgatgacaggcatttgtgtctagccaagttaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cctgtgggctgtctatgccactcgagatgatgacaggcatttgtgtctagccaagttaga 427
Query: 301 cccacagacacttgacacagagcagcagtgggacacaccatgccccacagagaacgcaga 360
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 426 cccacagacacttgacacagagcagcagtgggacacaccatgtcccagagagaacgcaga 367
Query: 361 ggctgcgtttgtcatctgtgggaccctgtacgttgtctataacacccgccctgccagtag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggctgcgtttgtcatctgtgggaccctgtacgttgtctataacacccgccctgccagtag 307
Query: 421 ggctcgtattcagtgttccttcgatgccagtggtactctcgcccctgaaagggcagcact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggctcgtattcagtgttccttcgatgccagtggtactctcgcccctgaaagggcagcact 247
Query: 481 ctcctattttccacgccgatatggtgcccatgccagccttcgctat 526
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctcctattttccacgccgatatggtgcccatgccagccttcgctat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
