Query= MSMg01no165_f10.b1 MSMg01no165_f10.b1 CHROMAT_FILE:
MSMg01no165_f10.b1 PHD_FILE: MSMg01no165_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:27 2005
(518 letters)
>mm_chr3_145554915_145555832
Length = 918
Score = 928 bits (480), Expect = 0.0
Identities = 504/512 (98%)
Strand = Plus / Minus
Query: 7 gaattccacagtatccaatcatggatatttcacaggagactcagacattgtttgagactg 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 718 gaattccacagtaaacaatcatggatatttcacaggagactcagacattgtttgaggctg 659
Query: 67 accttaggaaccatttcctgactgcgctcccaggcctgggtggaggcagccccctctggc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 accttaggaaccatttcctgactgcgctcccaggcctgggtggaggcagccccctctggc 599
Query: 127 tctccccggaccatcagcaatcattgtacatgctctgcctcttttgaaggaaatgacttt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tctccccggaccatcagcaatcattgtacatgctctgcctcttttgaaggaaatgacttt 539
Query: 187 ctcaagatcatgatgattctaagggggtagatacaaggcgagtcagaaggaagctcagaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctcaagatcatgatgattctaagggggtagatacaaggcgagtcagaaggaagctcagaa 479
Query: 247 agggggaggtggtggagtggagaaagacttccctccatactacaggaccagtcatgaggc 306
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 478 aggcggaggtggtggagtggagaaagacttccctccatactacaggactagtcatgaggc 419
Query: 307 aaactcatggcatgtgactcagtctctctaagatgtacccatggggtgtttctaggcgtc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 418 aaactcatggcatgtgactcagtctctctaagatgtacccatggggtgtttctaggcatc 359
Query: 367 tgtatccaacatcctgcatcaaccacctgaggctggatttaccttcctaggtgtggcaat 426
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtatctaacatcctgcatcaaccacctgaggctggatttaccttcctaggtgtggcaat 299
Query: 427 gggaaagcctgtcaggatgtgcctctgtgaggttcctgttccccgaccagccactctgac 486
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gggaaagcctgtcagggtgtgcctctgtgaggttcctgttccccgaccagccactctgac 239
Query: 487 ttgctgctggtggtggagaggtggctgtaagg 518
||||||||||||||||||||||||||||||||
Sbjct: 238 ttgctgctggtggtggagaggtggctgtaagg 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_f10.g1 MSMg01no165_f10.g1 CHROMAT_FILE:
MSMg01no165_f10.g1 PHD_FILE: MSMg01no165_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:27 2005
(612 letters)
>mm_chr3_145365972_145366987
Length = 1016
Score = 1110 bits (574), Expect = 0.0
Identities = 604/616 (98%), Gaps = 4/616 (0%)
Strand = Plus / Plus
Query: 1 acagaatataacggtatttaacggctcactcactcatgtgctgcaaaggccattgtgggg 60
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 201 acagaatataacggtatttaacagctcactcactcatttgctgcaaaggccattgtgggg 260
Query: 61 aagaaagaaagagaactcatctctggttgttactctctgtaacaattacaggttatttag 120
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 aaggaagaaagagaactcatctctggttgttactctctgtaacaattgcaggttatttag 320
Query: 121 agcttgtcctctcctcagcctgggaggatgagagttgatttgttggatgtacttgcaatc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 agcttgtcctctcctcagcctgggaggatgagagttgatttgttggatgtacgtgcaatc 380
Query: 181 tagaaagaaaccctgggcctgcttcccatgcttgcgaggggacagtctcatcccttttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaaagaaaccctgggcctgcttcccatgcttgcgaggggacagtctcatcccttttaa 440
Query: 241 tgacttcctccatccctctctgatctgaaccagtcttgcttaactccgtaatactgcttt 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tgacttcctccatccctctctgatctgaaccagtcttgcttaactccataatactgcttt 500
Query: 301 acccattcttcactggggaccatacagggttccaggaaactctcggggctaaaaacattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acccattcttcactggggaccatacagggttccaggaaactctcggggctaaaaacattc 560
Query: 361 cagacattccttaacactgccttcctcaaaaggtcggtttcttaggctcttcagagagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagacattccttaacactgccttcctcaaaaggtcggtttcttaggctcttcagagagaa 620
Query: 421 cgctgcccacacagttcacagggactgacggccg----ccacacaagccctgcattagca 476
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 621 cgctgcccacacagttcacagggaccgacggccggccgccacacaagccctgcattagca 680
Query: 477 gacagccaagggtggcctcctgtgccttgctctgaaaggctccctgtactcattccagag 536
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 gacagccaagggtggcctcctgtgccttgctctgaaaggctccctgtactcagtccagag 740
Query: 537 tcagagagactcagttttacaggggagccgaggacactggggtcctcagtaaagaggagc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcagagagactcagttttacaggggagccgaggacactggggtcctcagtaaagaggagc 800
Query: 597 catgagggaggtccgg 612
||||||||||||||||
Sbjct: 801 catgagggaggtccgg 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1016
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1006
Effective search space: 605612
Effective search space used: 605612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
