BAC Information

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BAC

Clone NameMSMg01-166F06
Chromosome3 (Build37)
Map Location 74,083,875 - 74,084,065
singlet/doubletsinglet
Overlap genenone
Upstream geneBche, LOC667425, LOC619764
Downstream geneLOC667434, LOC100041551, EG667459, BC050789, Serpini2, Wdr49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166F06.T7 (MSMg01no166_f06.b1)MSMg01-166F06.TJ (MSMg01no166_f06.g1)
ACCAG364187AG364188
length851862
length of high quality
(start - end)
164 (48 - 211)187 (77 - 263)
definitionCHROMAT_FILE: MSMg01no166_f06.b1 PHD_FILE: MSMg01no166_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:47 2005CHROMAT_FILE: MSMg01no166_f06.g1 PHD_FILE: MSMg01no166_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTGAGGTGCGC
GGAATTCTTTGTTCTTTTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGTTGTCGTCTTTTGCCTTGCATCAACTCTCGTTTTTT
TTTTTTTTTTTTTGTCTCTTCTTTCTTTTGTTGTTTTTTCTTTTTTTGTC
CCCGCCCGCATCTTGCCCCCTTTTTTTTTTTTTCTTCTCCAATCACCATT
ATTTATTCTTTCATTACTCATTTTTTCCTCTTCTTTTACCTCCCCTATTT
ATTTTCTTCCTTTTTTCACCATATTCCCCCCCCCTCTTTTTTTCCCTTTT
TTTTTTTCTTTCCTCCTTTCCCGCTCCCCCACACCTTTTTTTTTCCCCCC
CGCCTATTTTATTATCCATTTTCCCCCTTTTTTTTTCCCCCCCCCCCCCC
TTTTTTTCCCTTCCTTTCTCTTCCATTTTACTACCCCTTTTTTTCCCCTC
CTTTTTTTCTTTTTCTCCCTCCTTTTTCTTTATTTCCTTCCTCCTCTTTT
CCCCCGTTTTCCTTTATCCTCCCCTCTTCCCCCTTTTTTCCCTCTCCTTT
TTTTCGCCTCTTTTTTCCCCTTTCTCTCGCCTTTTTTTATCCCCCCCCCC
CTTCCCCCTTCCATTTATCCTCCCTTTTTTTTTTTCCCCCTTTCCCCTCT
TTCCCCCTTTTTCTCTCCCCTCCTTTTTCTTTTCCTCTCTTGTTTTCCCT
G
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCTGAAATAATTGAAACTAT
ATCTGCATTCAATTAATGAACAAGTATTAGAAGTGATTAAAAGTAAATAA
CATGATAGTCTCCTATTTGAATGTACTAGATATGCAATATTTATCACCTT
TGTATATGTTATTCTTATTTCAGATTTGAGCTATTAATGGGTGTTTGTGA
TATGTTTTTTCTTTTTTTTTATGTCTTCACTCTGTTTTTTTTTCTTCCTC
TCTTCTGTCCCACCTCTTTTTTTTTTTTTCCACCATCCGCCCATTCTCCA
CTATCCCCCCTTTTTTTATCTCTCTTTTTCCCCCCTTCCCCCCTCTCCCT
TTATTTTTTTGATAATTCCCCCCCCCCCCCTCCCTTTCACCTTTTTAATT
TTCTATTTATAGTTTTTCTTCTTCTTTTTCATTTTTCCACCCAAATACAA
ATTACGCCCTTACCTATTTTTACTTCCCCCTTTTTCTTCTCTACTACCTC
TTACTTCTCCTCTTTCTTTCCTTTTTCTTTTCTATATCTTCGCCTTTTTC
TTTGCCTTTCTTTCTTCGACCCCTTTTTATCACTTCGTGTTCCCAACCTT
TTACATTTATTTCTTTCCCTATGTCTTCTGTTCCCTCTCTCCATCTCTTT
TTCTTCTCATTCATATCTTATCTCATCCTTTCCAGATCTTTATAATTTTC
TTATTCACTATTTTTTTTTTATTTTTCTCACTTATGTTTCCATCTCTCAT
CCTCCTCCCCTTATATACTTCTTATCTCACTATTTTCTTCTGTCCATTCT
ATCTCCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_f06.g1 MSMg01no166_f06.g1 CHROMAT_FILE:
MSMg01no166_f06.g1 PHD_FILE: MSMg01no166_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:47 2005
         (187 letters)



>mm_chr3_74083675_74084265
          Length = 591

 Score =  323 bits (167), Expect = 4e-93
 Identities = 184/191 (96%), Gaps = 4/191 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctctgaaataattgaaactatatctgcattcaattaatgaacaagtattagaagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cttctctgaaataattgaaactatatctgcattcaattaatgaacaagtattagaagtga 332

                                                                       
Query: 61  ttaaaagtaaataac--atgatagtctcctatttgaatgtactagatatgcaatatttat 118
           ||||| |||||||||  ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 331 ttaaaggtaaataacatatgatagtctcctatttgagtgtactagatatgcaatatttat 272

                                                                       
Query: 119 cacctttgtatatgttattcttatttcagatttgagctattaatgggtgtttgtgatatg 178
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 271 cacctttgtatatgttattcttatttcagatttgagctattaatggttgtttgtgatatg 212

                      
Query: 179 t--tttttctt 187
           |  ||||||||
Sbjct: 211 tggtttttctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 591
Length adjustment: 8
Effective length of query: 179
Effective length of database: 583
Effective search space:   104357
Effective search space used:   104357
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)