BAC Information

Click to search

BAC

Clone NameMSMg01-166F17
Chromosome3 (Build37)
Map Location 42,500,428 - 42,500,743
singlet/doubletsinglet
Overlap genenone
Upstream geneSclt1, D3Ertd751e, LOC666031, LOC100039204
Downstream geneLOC100039219, LOC677788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166F17.T7 (MSMg01no166_f17.b1)MSMg01-166F17.TJ (MSMg01no166_f17.g1)
ACCAG364207AG364208
length776763
length of high quality
(start - end)
320 (47 - 366)340 (78 - 417)
definitionCHROMAT_FILE: MSMg01no166_f17.b1 PHD_FILE: MSMg01no166_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:50 2005CHROMAT_FILE: MSMg01no166_f17.g1 PHD_FILE: MSMg01no166_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTCACCTGATACCTTACATAGTCTAAATTCACTTCATTGCTCT
ACTTGCTATCAAGGAGAATGTTTTAAAAAAAAAGTTTAATTACTTTTAAT
GAAAAATGAACAAGCATGAAGATAAATTGCAACCATCCTTAATGTGGCAT
CTGATTCCTCTTGCTCAGGGCAATGGTTAAGTTTTAACTCTCTCATTGCC
ATGATTGGGTTAAATATTGTTGAGGGACTGACCAAAGAGTTCACAAAGAC
ATCCTCTTCCAAACACCCCAGGCCATTGCCAAGCCTATTGCTCACCCTCA
TAACCTGAAGGTGATATTTTCACCCGCCGCCCACCCCATACTTATAATAT
TATCATTGGAGTTGGCGCCCCCCCTTTACCAACATACCTATTTCCTGAGC
CATCAGTGTGTTGGAAAGCCAGCTCTCAGATGCCTATTTTTTTTTTCTAC
GAATGTGTTTTAATCAAATTCTAATTATGTAAAAGAGTATTTATATATTT
TGTATAATAAAATATTCTGAAACAATATAATAATAAAACTCTTGAAATAT
CTAAATGGATAAAATTCTTTCTCTTGATTTTTTATCCTTACATCAAACTA
CCGATAATTTGTCTACTAATACTATTTTTATATATAATACACTCGCCCTA
TTTTAACAACTCAAACCATATTTTTTAAATTATCTACCAACACTCCTCAC
ATTATTTTATTTATACTATTATCTTT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGATTACTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAA
GAAGGACACATGCTCCACCCCCCCTCCTAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGTTATTAAAAAGAATG
AATTTATGAAATTCCTAGTCAAATGGATGGATCTGGAGGGTATTCTCCTG
AGAGAGTATCTCATTTCCATTGAAACCCACACTTATTGTAATCCTTGCAT
ATCCGCATTTTATTTCATAACCTTATAAACCTTATACACTAGATATCAGC
TGCTCTTGCTATTTTATTTTCCCCCGTGTTTATTTCTCTTATTTGTGTCC
CCTATTTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_f17.b1 MSMg01no166_f17.b1 CHROMAT_FILE:
MSMg01no166_f17.b1 PHD_FILE: MSMg01no166_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:50 2005
         (320 letters)



>mm_chr3_42500345_42501066
          Length = 722

 Score =  600 bits (310), Expect = e-176
 Identities = 314/316 (99%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcacctgataccttacatagtctaaattcacttcattgctctacttgctatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaattcattcacctgataccttacatagtctaaattcacttcattgctctacttgctatc 340

                                                                       
Query: 65  aaggagaatgtttt--aaaaaaaaagtttaattacttttaatgaaaaatgaacaagcatg 122
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaggagaatgtttttaaaaaaaaaagtttaattacttttaatgaaaaatgaacaagcatg 280

                                                                       
Query: 123 aagataaattgcaaccatccttaatgtggcatctgattcctcttgctcagggcaatggtt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aagataaattgcaaccatccttaatgtggcatctgattcctcttgctcagggcaatggtt 220

                                                                       
Query: 183 aagttttaactctctcattgccatgattgggttaaatattgttgagggactgaccaaaga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aagttttaactctctcattgccatgattgggttaaatattgttgagggactgaccaaaga 160

                                                                       
Query: 243 gttcacaaagacatcctcttccaaacaccccaggccattgccaagcctattgctcaccct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gttcacaaagacatcctcttccaaacaccccaggccattgccaagcctattgctcaccct 100

                           
Query: 303 cataacctgaaggtga 318
           ||||||||||||||||
Sbjct: 99  cataacctgaaggtga 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space:   221743
Effective search space used:   221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)