BAC Information

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BAC

Clone NameMSMg01-166G05
Chromosome3 (Build37)
Map Location 93,049,628 - 93,049,994
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
Downstream geneEG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166G05.T7 (MSMg01no166_g05.b1)MSMg01-166G05.TJ (MSMg01no166_g05.g1)
ACCAG364229AG364230
length766810
length of high quality
(start - end)		368 (51 - 418)72 (78 - 149)
definitionCHROMAT_FILE: MSMg01no166_g05.b1 PHD_FILE: MSMg01no166_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:52 2005CHROMAT_FILE: MSMg01no166_g05.g1 PHD_FILE: MSMg01no166_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTCATGTAACGAACTCTGGAAGCATAGCAGGACAGAACC
CAGCAGCAGCAGCAACAACAACAGCAACAAACCTTTGTTGAGATTCTGAA
ACCCTGTATTTATTCCTTTGTCCTGCCATCTCCTCTACTGCATTAGAAAC
CATGTTTCCCATCCTGTGTAGCCACACTTTGGGTGCCACTTGTTGGTGTA
CTTTCAGAGATGGGGTATTTTTATAGGGCTATTTCATACCTCTACCTCCC
TTCTAACCTTTATTCCTCCCTCATCTCATCCAATCCCTCAACACTAGGTG
AAAGAAGAAGAATGTTAAAAGGGAAACTGTGTGTAGGCCTCTTACAGCCA
ACAAAATAGACTACTTCCCCCCCATTAGGAGTATTGGATTCTTTGCTGCA
AGTCCAGTCTTCATCAGCAGTATTTCTTCAGCTTCTTTTTGACTATCCTC
ATCCTCTATTACGACCCAATTTATTGTAACATTACCATTGTTCTCCATCT
CTTTCTCAGTTCTTCTTTTGTCTTAACCTCTCACCTCTATTTTCTTGTAC
TTTCTTATCTCCTTCTCCCTGTTTCATCCTCCCCCCCCTGTTTATTTCTT
TTTCTATTTTTTTTTTCTTTGCCGCTGTTTTATTCCCCCTCCCCCTCTCT
TCTTTTTTTTCTTCATTTCACTTTACATTCTTCAACCCCTTTTATTTATA
TACTTTCCTTTCTTTG

TTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGGTATGAAAGTCATCTGGT
TTAGTGAAATAGCAGAGCTAGCTTATATAGCTGGAGGTGGGGTAAGGATG
GTTGTTTTCCCCTCCCCTCTCCCCCCCCCTTTTTTTCCCCCTCCCCCCCC
CCCCCCCCCCCCCCTTTCCCCTCCCTCCCCCCCCCCCCCCCTCCCCCCCC
CCCCCTCTTTTTTCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCTTCCTT
TCCCCTCCCTTCCCCCCTTCCCCTTTCTTCTTTCTTTTTCTTACCCCCCC
CCCCCCCCCTTCCCCCCCCCCCCTCTTTCTCCCCCCCCCCCCCCCCTCTT
TCTCCCCCCCCCCCCTTCTCTTCTCCATTTTCCCCACATCCCCCCATTTT
TTTTTTTTTTACCCCCCCCCCCCCCTTTCTCCCCCCCTTTTCCCCCCCCC
TCCCTCTTTCTCCCCTCCCCCCCCTCCTTCCTTCCCCCCTCTCCCCCCCC
TCCCCCTCTCCCTCTCCCCCCCCCCCCCCTCCCCTCCCCCCCCCCCTTCC
CCCCCCCTCTTTCCTTTCCCTTTCCCCCTCTCCCCCCCCCCTCTTCCCCT
CTTTCCCCCCCCCCCCCTCCTTTTCCCCCCCCCCCCCTCCCCCCCCTCCC
TCCTCCCTCCCCTCTTTCCTCATTCCTCCCCCCCCCCCTTTTTCCCCCCC
TCCTCTCCCCTCCCCCCTCCTCCCCCTCCCCCCATTTTCCTTTTTCTCCT
CCCTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_g05.b1 MSMg01no166_g05.b1 CHROMAT_FILE:
MSMg01no166_g05.b1 PHD_FILE: MSMg01no166_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:52 2005
         (368 letters)



>mm_chr3_93049239_93050006
          Length = 768

 Score =  671 bits (347), Expect = 0.0
 Identities = 361/367 (98%), Gaps = 3/367 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtcatgtaacgaactctggaagcatagcaggacagaacc---cagcagcagca 61
           ||||||||||||| || |||||||||||||||||||||||||||||   |||||||||||
Sbjct: 756 gaattcagtcatggaatgaactctggaagcatagcaggacagaacccagcagcagcagca 697

                                                                       
Query: 62  gcaacaacaacagcaacaaacctttgttgagattctgaaaccctgtatttattcctttgt 121
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gcaagaacaacagcaacaaacctttgttgagattctgaaaccctgtatttattcctttgt 637

                                                                       
Query: 122 cctgccatctcctctactgcattagaaaccatgtttcccatcctgtgtagccacactttg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cctgccatctcctctactgcattagaaaccatgtttcccatcctgtgtagccacactttg 577

                                                                       
Query: 182 ggtgccacttgttggtgtactttcagagatggggtatttttatagggctatttcatacct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ggtgccacttgttggtgtactttcagagatggggtatttttatagggctatttcatacct 517

                                                                       
Query: 242 ctacctcccttctaacctttattcctccctcatctcatccaatccctcaacactaggtga 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctacctcccttctaacctttattcctccctcatctcatccaatccctcaacactaggtga 457

                                                                       
Query: 302 aagaagaagaatgttaaaagggaaactgtgtgtaggcctcttacagccaacaaaatagac 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aagaagaagaatgttaaaagggaaactgtgtgtaggcctcttacagccaacaaaatagac 397

                  
Query: 362 tacttcc 368
           |||||||
Sbjct: 396 tacttcc 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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