Query= MSMg01no166_h24.b1 MSMg01no166_h24.b1 CHROMAT_FILE:
MSMg01no166_h24.b1 PHD_FILE: MSMg01no166_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:01 2005
(286 letters)
>mm_chr3_154126336_154127022
Length = 687
Score = 522 bits (270), Expect = e-153
Identities = 279/282 (98%), Gaps = 1/282 (0%)
Strand = Plus / Minus
Query: 6 gaattc-aatataatgtttctactttaccggagtataaaaaccatattatatataacggg 64
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gaattcaaatataatgtttctactttaccggagtataaaaaccatattatatataacggg 428
Query: 65 gtagttctctggagtcattaggtatcctacggaaggagaagtgaccaaaactcatccaat 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 427 gtagttctctggagtcattaggtatcctacagaaggagaagtgaccaaaactcatccaat 368
Query: 125 agcatgccctgttattctctgtagatgtaattctttctcttactaaacaaaagcacaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agcatgccctgttattctctgtagatgtaattctttctcttactaaacaaaagcacaata 308
Query: 185 ctctctcactaacatgtagcatgggaaaatgatatcactgaagataggtcagaactgata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctctctcactaacatgtagcatgggaaaatgatatcactgaagataggtcagaactgata 248
Query: 245 tgtgccttctgtgccatatatatatatatatgtgtgtgtgtg 286
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 247 tgtgccttctgtgccatatatatatatatgtgtgtgtgtgtg 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space: 187806
Effective search space used: 187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no166_h24.g1 MSMg01no166_h24.g1 CHROMAT_FILE:
MSMg01no166_h24.g1 PHD_FILE: MSMg01no166_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:01 2005
(511 letters)
>mm_chr3_153979474_153980384
Length = 911
Score = 942 bits (487), Expect = 0.0
Identities = 505/511 (98%)
Strand = Plus / Plus
Query: 1 tctgcatctcttggtttacctacgggttctcacctgtatgacacgtctgcttaagcctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcatctcttggtttacctacgggttctcacctgtatgacacgtctgcttaagcctgt 260
Query: 61 cctttctgccagtttctggagggtctgtgcatctgggttgttgtcctgagcgaactgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttctgccagtttctggagggtctgtgcatctgggttgttgtcctgagcgaactgtgc 320
Query: 121 ttgcataacctgtggttgtttttaaagacagatgtcgggagcaaacagttaaaagtttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ttgcataacctgtggttgtttttaaagacagatgtcgggagcaaacagttaaaagcttga 380
Query: 181 tcttttgcattctgatggcagaacagattaaggcacacaaagaaaaacgtgttgtgtatt 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttttgcattctgatggtagaacagattaaggcacacaaagaaaaacgtgttgtgtatt 440
Query: 241 ttggtatttgaaaatgaatacagcgaacacaagtaaaagaaaggcgtgctttgtaaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggtatttgaaaatgaatacagcgaacacaagtaaaagaaaggcgtgctttgtaaattt 500
Query: 301 acattaactcttattctaagatctttaaaaattaaccccctggaaactctgcccctcagc 360
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 acatgaactcttattctaagatctttaaaaattaaccgcctggaaactctgcccctcagc 560
Query: 361 tctgccattagagacactaccctctctccacccagtctcagaactcccaaaacacacagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgccattagagacactaccctctctccacccagtctcagaactcccaaaacacacagg 620
Query: 421 agctgactctcccacccttggcttcccatttgtaaaatatccctgcactgggactcaacg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctgactctcccacccttggcttcccatttgtaaaatatccctgcactgggactcaaca 680
Query: 481 aaagactcaagtcccgccatagttatctcta 511
||||||||||||||| |||||||||||||||
Sbjct: 681 aaagactcaagtcccaccatagttatctcta 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
