Query= MSMg01no167_a06.b1 MSMg01no167_a06.b1 CHROMAT_FILE:
MSMg01no167_a06.b1 PHD_FILE: MSMg01no167_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:40 2005
(589 letters)
>mm_chr3_54617937_54618926
Length = 990
Score = 973 bits (503), Expect = 0.0
Identities = 560/591 (94%), Gaps = 23/591 (3%)
Strand = Plus / Plus
Query: 5 gaattccaggttcacccg--agagacctctggccaacacacacacacacacacacacaca 62
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattccaggttca---gtgagagacctctggccaacacacacacacacacacacacaca 273
Query: 63 cacacacacacacacacacacacacacacaccctcacatgcacgc---cataccaccaca 119
||||||||||||||||| ||||||||| |||| ||||||||||||
Sbjct: 274 cacacacacacacacac--------------cctcacatgtacgcacacataccaccaca 319
Query: 120 caccacccagagatccatagccatacaggttgcagacgcagtccttgatccctctgtctt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caccacccagagatccatagccatacaggttgcagacgcagtccttgatccctctgtctt 379
Query: 180 ttgtggatctagcaagaaggaagccttttgtgtgttagggaagaggcttccactaagcaa 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgtggatctagcaagaaggcagccttttgtgtgttagggaagaggcttccactaagcaa 439
Query: 240 gctactgggggcttgagctgagacttctcagtctccagaactgtgaagaacacaaagtta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gctactgggggcttgagctgagacttctcagtctccagaactgtgaagaacacaaagtta 499
Query: 300 ttgcttggttataaatcatctatagggcagtatcctcttacagcagactaaacaggctgg 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 ttgcttggttataaatcatctatagggcagtaccctcttacagcagactaaacaggctgg 559
Query: 360 caaagctactttaaaaacattatgtttgttgataaagccatgagatatcttttttt-cta 418
|||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| |||
Sbjct: 560 caaagctactttaaaaacattacgtttattgataaagccatgagatttcttttttttcta 619
Query: 419 taataagactgatgcccttcccttaaaaggcagactaaacaaggcttttcaatggagaga 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 620 taataagactgatgcccttcccttaaaaggcagactaaacaaggcttttcaatgaagaga 679
Query: 479 tggggccctcaccgtctctctccagccttagcaggaggagagaacacaggatctgattga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tggggccctcaccgtctctctccagccttagcaggaggagagaacacaggatctgattga 739
Query: 539 gaaatgggaagtggtacaaagtgggggcattatgcgcgatgacgcttgcca 589
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaatgggaagtggtacaaagtgggggcattatgcgcgatgacgcttgcca 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space: 567420
Effective search space used: 567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_a06.g1 MSMg01no167_a06.g1 CHROMAT_FILE:
MSMg01no167_a06.g1 PHD_FILE: MSMg01no167_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:41 2005
(620 letters)
>mm_chr3_54768903_54769922
Length = 1020
Score = 1168 bits (604), Expect = 0.0
Identities = 616/620 (99%)
Strand = Plus / Minus
Query: 1 aatctgcagcttgttaaatagctgacagagccaggggaaggaatgcagattgactgggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 aatctgcagcttgttaaatagctgacagagccaggggaaggaatgcagattgactgggag 761
Query: 61 agaacagatttctgccgatcacgcaggagctcatgaatattgattctggacctgatttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 agaacagatttctgccgatcacgcaggagctcatgaatattgattctggacctgatttcc 701
Query: 121 ccctccagagatgagaagacacagtgccattcataatgcagcgtagaaccctagaccaac 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 700 ccctccagagatgagaagacacagtgccattcataatgcaccgtagaaccctagaccaac 641
Query: 181 tgctccatcaggctagaatataaactgctcatcaaactgcaatctagatacatttcttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tgctccatcaggctagaatataaactgctcatcaaactgcaatctagatacatttcttca 581
Query: 241 ctttcgtatcgtgtttccaaggagaaaacccatttcgcaaaattgttgataggccctgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ctttcgtatcgtgtttccaaggagaaaacccatttcgcaaaattgttgataggccctgct 521
Query: 301 ctaggaattctaagttggaacccaagaaaatgggagctacctcatactaagtgctcaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctaggaattctaagttggaacccaagaaaatgggagctacctcatactaagtgctcaaca 461
Query: 361 acaaaggcttaatagaaaaaactcacaggcagagtaaaatctcagctggggtccattttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acaaaggcttaatagaaaaaactcacaggcagagtaaaatctcagctggggtccattttg 401
Query: 421 taggtgtcattgtggatggaataatcagggaggagaaaaaggataaggggcaagggagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 taggtgtcattgtggatggaataatcagggaggagaaaaaggataaggggcaagggagag 341
Query: 481 ttgttgatgggacacactggaagagcaaccctgccccccaatgccatgttacccaggcct 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 340 ttgttgatgggacacactggaagagcaaccctgccccccaatgccgtgttacccaggcct 281
Query: 541 ttctgtggaatgtgtaagcagttcctaaaagaaaattgcagacgtgagtaattaaaagct 600
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 280 ttctgtggaatgtgtaagcagctcctaaaagaaaattgcagacgtgagtaattaaaagtt 221
Query: 601 ttgttcttgccgatctaatt 620
||||||||||||||||||||
Sbjct: 220 ttgttcttgccgatctaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
