Query= MSMg01no168_a06.b1 MSMg01no168_a06.b1 CHROMAT_FILE:
MSMg01no168_a06.b1 PHD_FILE: MSMg01no168_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:56 2005
(405 letters)
>mm_chr3_41062898_41063702
Length = 805
Score = 650 bits (336), Expect = 0.0
Identities = 359/368 (97%), Gaps = 3/368 (0%)
Strand = Plus / Minus
Query: 40 aaaatcagaataccaagttgtttcaagttttgaaataaaaatgttgcgccttaatacttt 99
|||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 805 aaaatcagaatagcaagttgtttcaagttttgaaataaaaatgttgtgtcttaatacttt 746
Query: 100 ccaaggctactgagatagctcagtagacaatgacacttgccactaagcccgatgctctga 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccaaggctactgagatagctcagtagacaatgacacttgccactaagcccgatgctctga 686
Query: 160 gattgatcgccaggacctacaaagg---agaagagacccaaatcccgaaagatgtcctct 216
||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 685 gattgatcgccaggacccacaaaggagaagaagagacccaaatccggaaagatgtcctct 626
Query: 217 gacctccacatactcgctgtgaattgagggtgccctccactcaccccacaaataaatata 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacctccacatactcgctgtgaattgagggtgccctccactcaccccacaaataaatata 566
Query: 277 tgcttgtaaaaacaattcacattttctttcccactataagacatattatgaggcatctaa 336
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgcttgtaaaaacaattcacatgttctttcccactataagacatattatgaggcatctaa 506
Query: 337 acattttccccattttactgtttcacagggttaaataccattctcagtatataggccatt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acattttccccattttactgtttcacagggttaaataccattctcagtatataggccatt 446
Query: 397 ttcaaggt 404
||||||||
Sbjct: 445 ttcaaggt 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_a06.g1 MSMg01no168_a06.g1 CHROMAT_FILE:
MSMg01no168_a06.g1 PHD_FILE: MSMg01no168_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:56 2005
(242 letters)
>mm_chr3_40969683_40970324
Length = 642
Score = 445 bits (230), Expect = e-129
Identities = 239/242 (98%)
Strand = Plus / Plus
Query: 1 aatagtatggaaagccactgagtctctgggtaagaggagaagcattcacatgtcatgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aatagtatggaaagccactgagtctctgggtaagaggagaagcattcacatgtcatgtaa 260
Query: 61 gtgaccttattaaggagctagacagtgaagaagaggtgggaaccctcaagataaccaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gtgaccttattaaggagctagacagtgaagaagaggtgggaaccctcaagataaccatcc 320
Query: 121 atggcttccaagaagctgggctgtgagaagttggaggttgagccgacggtgaactgtgag 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 atggcttccaagaagctgggctgtgagaagttggaggttgagccgaaggtgaactgtgag 380
Query: 181 tcagttggaccctctttgaggaatgctgggagagagggagagtagagaaagggggctcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagttggaccctctttgaggaatgctgggagagagggagagtagagaaagggggctcta 440
Query: 241 ga 242
||
Sbjct: 441 ga 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
