BAC Information

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BAC

Clone NameMSMg01-168D21
Chromosome3 (Build37)
Map Location 121,267,928 - 121,268,205
singlet/doubletsinglet
Overlap genenone
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
Downstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168D21.T7 (MSMg01no168_d21.b1)MSMg01-168D21.TJ (MSMg01no168_d21.g1)
ACCAG365490AG365491
length7051,462
length of high quality
(start - end)
316 (44 - 359)---
definitionCHROMAT_FILE: MSMg01no168_d21.b1 PHD_FILE: MSMg01no168_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:19 2005CHROMAT_FILE: MSMg01no168_d21.g1 PHD_FILE: MSMg01no168_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCATTCTTTGCTGGGCTCAGACTCCTGATGTTCTAGGCAGGATTTC
ACTCTGGGCTTCCCTTTCTACAAAGAATGGAAGAAAAAGTAACTTGTTTT
AAAAACTGGGAACAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCG
ACTGCTCTTCCGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGC
TCACAACCATCCGTAATGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAG
ACAGCTACAGTGTACTTATATATAATAAAATAAATAAATCTTAAAAAAAA
AAAAAAATTAAATGGGACCCAGGGCCGACCAATGGTTCTGTGGTTAAGAC
TGCTCTTCCAGAGGCCCTGAGAAAAAAACCTAGCAACCGCTTGGGGGCTC
ACAACCATCTATAATGGGATCTGATGCCCTCTTCTGGTGTGTTTGAAGAC
AGCTACAATGTACTCATATAAAATCAAAAAACAAACAAACAAACAAAGCT
GGGAACATAGGTCAGCGACAGAGTGATTGTTGAATGTGCACATAAGGCCC
TAGAAGGAGGCAAGCAAATATAAATCTTGGACATTTCCTTTTTTTATAAC
TTTTTCTTTTTCCTTTTTTTGCTGCTTCCTCTAACAGGGGTCCTTGTGTG
TAGTT
TCCTACTCTCTCCTCCCATTTCACCAACCCTTCACGCAGTTACATACTCA
CCCACGACACAATATGGCCGGGAANNNNNNNGGAGGGCAGTACTCTTTCT
CGGGGGGACGATAAGAGCTGGCAATATGGCGCCTGGCATTTGTATCCGCT
CCTNCATATCCCGCCCCCCCTAATATCTAATAAANATATCTATATATAAT
CACCACCACACGAGAATCGTGTCACGATTATAAATGAATGATAGAGCGGG
CGGAGTGGTGTGGGCCCTTACTCCTCGTTCTCGTAGTCCCTTATAAACAA
AATAGACAACAGCAAANAGGAATAACAAAAAGACATGTATGGTGGTGGAT
TGTGTTTGCTGTGGCTTCCGCNCCGTAAGTAATAAACAGATCAACCCCTA
TTGTCTCTCATATATTATATATTATTCTCTATTCNACTTTCATGTCTGTG
TTGAGCGTGAGCATGCGCAGTCACCGATTGACTCCGTTTTATGTGGTACA
CCCATATTGTACAAGAGGCTCTGTGTGGTATATCACAACACAAACCCCAC
CAACACACCATGTTATTTTTCTCGAGAGTACGGATAAACAACTCTTTACT
CAAAATGTTAGTGATATTTTATTATACAAGAAATCATCGCCTTCTATTTT
TCGCTTATTTTATTATATACCGTTTTATTACATCACAATTCCTATTTAGC
CGTCCTCACCAAAATTACATATGTATTTTTATTATAAGATCACCCTCTCA
TTCAACTTATGCACTTCCTCACGCGTTAACTCGCAGTGATTAGTTACTGT
ACTTATATACAGACGTCTTTGTCACATTGTGAGGCCCCCNNGTTTCCCCG
CTAACACAGATCCCAGCGTGATATAATTGTGTTACATATCCGTGTTACAA
TTCTACGCAACTACNTTTCATCTCTGTTCTCTCACATCTCACTATTATTT
ACACGCCACATAATCTTCAAATATTATAAGTTGTGGGCGTAGGGTAGTCG
GCAATAATCACGTAACGAAATACCGCCACCACAAGCTATATCTCGACGCA
GCCGTCAGAGACACAGATATTGCGACCGCCTTACACGCCCGNCCGTCATT
GTCAATCGTTAGCCGGAAGCCCATGTTTCACTATCATATAATATAACCGC
TATGATTACCACCTTAACCCACCACTTATATTATATATTATGCACATAAG
CACGGGCGGTGCGCGTCGACTCTTGCGACATAACATCTCTATAAACANCT
TAACATTGTTCTCTCTGTGATGATGGCACGCTATGAGGCGGCTCCGCGCC
CCTATCCTCACATATTATATATATAACCTTAATATTTCACTGCTCCTCTG
CGCGAGTCGATACTATAGCATATAAGCTTATTTAAACCTCCTCACACTAT
ATAGAACAATATAAGACGGCCGCGATATGAGATATTAGTGAGTCTATGTG
TGAGAATTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_d21.b1 MSMg01no168_d21.b1 CHROMAT_FILE:
MSMg01no168_d21.b1 PHD_FILE: MSMg01no168_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:19 2005
         (316 letters)



>mm_chr3_121267885_121268600
          Length = 716

 Score =  346 bits (179), Expect = e-100
 Identities = 258/289 (89%), Gaps = 16/289 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctcattctttgctgggctcagactcctgatgttctaggcaggatttcactctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaattcctcattctttgctgggctcagactcctgatgttctaggcaggatttcactctg 262

                                                                       
Query: 64  ggcttccctttctacaaagaatggaagaaaaagtaacttgttttaaaaactgggaac-ag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ggcttccctttctacaaagaatggaagaaaaagtaacttgttttaaaaactgggaacaag 202

                                                                       
Query: 123 ggctggtgagatggctcagtgggtaagagcacccgactgctcttcc-gaaggtcc-gaag 180
           |||||| || ||||||| |||| |||        ||||||| |||| | |||||| | ||
Sbjct: 201 ggctggagaaatggctctgtggttaa--------gactgcttttccag-aggtcctg-ag 152

                                                                       
Query: 181 ttcaaatcccagcaaccacatggtggctcacaaccatccgtaatgagatctgact-ccct 239
           ||||| ||| ||||||||||||||||||||||||||||  ||||| ||||||| | ||||
Sbjct: 151 ttcaattcctagcaaccacatggtggctcacaaccatctataatgggatctga-tgccct 93

                                                            
Query: 240 cttctggagtgtctgaagacagctacagtgtacttatatataat-aaaa 287
           ||||||| |||| |||||||||||||| |||||| ||||| ||| ||||
Sbjct: 92  cttctggtgtgtttgaagacagctacaatgtactcatataaaatcaaaa 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)